PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017337001
Common NameGSBRNA2T00017337001, LOC106427563
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 323aa    MW: 36203.5 Da    PI: 9.3224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017337001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.2e-18172226256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Le+ F+++++++++++  LAk+l+L  rqV vWFqNrRa+ k
  GSBRNA2T00017337001 172 RKKLRLSKDQSAFLEDSFNEHNTLNHKQKIALAKQLNLRPRQVEVWFQNRRARTK 226
                          577789***********************************************98 PP
2HD-ZIP_I/II125.62.2e-40172262192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE+sF+e+++L++++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+kev+eLr +
  GSBRNA2T00017337001 172 RKKLRLSKDQSAFLEDSFNEHNTLNHKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTDENRRLQKEVKELR-A 260
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  GSBRNA2T00017337001 261 LK 262
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.455168228IPR001356Homeobox domain
SMARTSM003891.5E-15170232IPR001356Homeobox domain
SuperFamilySSF466894.28E-18171237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-17172226IPR009057Homeodomain-like
CDDcd000865.22E-15172229No hitNo description
PfamPF000463.1E-15172226IPR001356Homeobox domain
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003405.1E-26228271IPR003106Leucine zipper, homeobox-associated
PfamPF021831.0E-10228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEPALYLRDN TNKFSFPEKP SKIPNNPSAS STSTSDKNLG FNMGLDVLGF GSQRSLSSSL  60
SPSVEDEKQY KSKLTQRANY SDGVRSSSSV DPSLQLQLHL PWIPENRAAT VAEPSMSVSP  120
PDSVTSSFRL DFGIKSYGYE RRNNKREMED EVEKSTSRAS NEDNDDENGA IRKKLRLSKD  180
QSAFLEDSFN EHNTLNHKQK IALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKKC  240
CESLTDENRR LQKEVKELRA LKTSSPFYMQ RPATTLTMCP SCERVATSSS QPSTSAAHID  300
LSTSTFHSPL IPVKPGPAKQ VS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017337001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4311821e-174AJ431182.2 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT14 (hat14 gene).
GenBankAK2274231e-174AK227423.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL14-07-H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723745.10.0homeobox-leucine zipper protein HAT14
SwissprotP466651e-159HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A078IVZ50.0A0A078IVZ5_BRANA; BnaA03g55490D protein
STRINGBra005907.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-144homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]