PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00017268001
Common NameGSBRNA2T00017268001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 393aa    MW: 44423.8 Da    PI: 5.4485
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00017268001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-2067123157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  GSBRNA2T00017268001  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                          688999************************************************995 PP
2START104.61.7e-332553933129
                          HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
                START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                          a  a++el+++++++ep+W +++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++   ve+l+d++ qW+  +a    +a+tl+
  GSBRNA2T00017268001 255 AVVAMEELMRMVQVDEPLWNSLV--LDEEEYARTFPRGIGpkpagFRSEASRESAVVIMNHISIVEILMDVN-QWSMLFAgmvsRAMTLA 341
                          56689******************..************999********************************.99999999999****** PP

                          EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEE CS
                START  84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvS 129
                          v+s+g     +   +m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S
  GSBRNA2T00017268001 342 VLSTGvagnyNGALQMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDIS 393
                          *******9995556799*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2245122IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
CDDcd000861.40E-1867125No hitNo description
PfamPF000461.4E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084826.221244393IPR002913START domain
SuperFamilySSF559617.69E-14245393No hitNo description
CDDcd088753.04E-75248393No hitNo description
PfamPF018521.6E-27256393IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHS YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PHHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENS  180
RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNSGGDVYG NNPTDQFKSI  240
IAPTESDKPV IIDLAVVAME ELMRMVQVDE PLWNSLVLDE EEYARTFPRG IGPKPAGFRS  300
EASRESAVVI MNHISIVEIL MDVNQWSMLF AGMVSRAMTL AVLSTGVAGN YNGALQMTAE  360
FQVPTPLVPT RETYFARYCK QQADGSWAVV DIS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00017268001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487097.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_018487098.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
RefseqXP_018487099.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078K1020.0A0A078K102_BRANA; BnaCnng73480D protein (Fragment)
STRINGBo8g115250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]