PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00017061001 | ||||||||
Common Name | GSBRNA2T00017061001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 265aa MW: 28592.3 Da PI: 8.8919 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.2 | 4.5e-15 | 79 | 118 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + GSBRNA2T00017061001 79 QKKKHCNCKHSRCLKLYCECFASGTYCDG-CNCINCFNNVD 118 589**************************.********986 PP | |||||||
2 | TCR | 52.6 | 9e-17 | 161 | 199 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgCnCkks ClkkYCeCf+a+ Cse+CkC dCkN GSBRNA2T00017061001 161 KHNKGCNCKKSGCLKKYCECFQANILCSENCKCLDCKNF 199 589***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.2E-17 | 79 | 119 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.015 | 80 | 201 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.9E-11 | 81 | 116 | IPR005172 | CRC domain |
SMART | SM01114 | 7.5E-19 | 161 | 202 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.8E-13 | 164 | 199 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGNAGGGGKL PPKNDGGFGA PARDPARQLD EHSRPKPAPT VVTSSLRPVA TSQSQILKSN 60 QASVSLVRPI VEGRDGTPQK KKHCNCKHSR CLKLYCECFA SGTYCDGCNC INCFNNVDNE 120 PARRDAVEAT LERNPNAFRP KIASSPHGVR DKREEMVLLG KHNKGCNCKK SGCLKKYCEC 180 FQANILCSEN CKCLDCKNFD GSEERRALFH GEHANNMAYL QQAANAAITG AVGSSGFAPY 240 PAPKRRKGGQ DISFSHATKD TSSAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-34 | 72 | 210 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-34 | 72 | 210 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00017061001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118658 | 0.0 | AK118658.1 Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20. | |||
GenBank | BT005931 | 0.0 | BT005931.1 Arabidopsis thaliana At4g29000 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137820.1 | 1e-177 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-135 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A078JYN9 | 0.0 | A0A078JYN9_BRANA; BnaAnng37830D protein (Fragment) | ||||
STRING | Bra024171.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-137 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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