PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016973001
Common NameGSBRNA2T00016973001, LOC106375055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 280aa    MW: 32226.2 Da    PI: 8.219
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016973001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-50171412128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeel+ +yL++kve+k+++l e ik+vdiyk++PwdLp+  + +ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk+
  GSBRNA2T00016973001  17 LPGFRFHPTDEELLEYYLRRKVENKPIKL-ELIKQVDIYKYDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTSSGFWKATGIDKP 105
                          69***************************.99***************7777799************************************ PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s +   vglkk+Lv+y g+a kg+ktdW+mhe+rl
  GSBRNA2T00016973001 106 VYS-SLDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 141
                          ***.8899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.78716165IPR003441NAC domain
SuperFamilySSF1019413.92E-5616164IPR003441NAC domain
PfamPF023651.1E-2518141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSGEGSKDHQ DEDETTLPGF RFHPTDEELL EYYLRRKVEN KPIKLELIKQ VDIYKYDPWD  60
LPRVSSVGEK EWYFFCMRGR KYRNSVRPNR VTSSGFWKAT GIDKPVYSSL DCVGLKKSLV  120
YYLGSAGKGT KTDWMMHEFR LPSTTKTDSP VQQAEVWTLC RIFKRVTHQR NPTIVQSNRK  180
PVITLADSCS KTSSLDSDHT SHRVVDSLSH KLHEPHLQLQ SPTQNPYWNQ LTRFGFNQPT  240
YTCHDNSLLS FENINGGDFI GDSASWDELR SVIDGNTKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521816519165NO APICAL MERISTEM PROTEIN
1ut4_B4e-521816519165NO APICAL MERISTEM PROTEIN
1ut7_A4e-521816519165NO APICAL MERISTEM PROTEIN
1ut7_B4e-521816519165NO APICAL MERISTEM PROTEIN
4dul_A4e-521816519165NAC domain-containing protein 19
4dul_B4e-521816519165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016973001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756690.0KM975669.1 Brassica napus NAC transcription factor 42.1 (NAC42.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670411.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK551e-170NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A078IVI00.0A0A078IVI0_BRANA; BnaA05g34370D protein
TrEMBLA0A397ZDB50.0A0A397ZDB5_BRACM; Uncharacterized protein
STRINGBra004736.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-172NAC domain containing protein 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]