PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016584001
Common NameGSBRNA2T00016584001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 487aa    MW: 53694.3 Da    PI: 8.0479
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016584001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-05102124123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00016584001 102 FVCEICNKGFQRDQNLQLHRRGH 124
                          89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.62E-6101124No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5101124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.7E-5102124IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SMARTSM00355240144174IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.62E-6174199No hitNo description
SMARTSM00355180179199IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFSV  60
PESQPQKKRR NQPGNPGPYE KNDPESEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRSNKEVIR KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK  180
CDKCSKKYAV QSDCKAHSKT CGTKEYRCDC GTLFSRRDSY ITHRAFCVAL AEETAREVVL  240
PQNQNHQSNP LIIHQSSSHH QAQANMNISS SSSSSHNIIN TLHFETNQQQ TDDQIINYHH  300
HGVPTWLSPQ PQDLTSSNPS PSNGGGGGGL FSLAASPAMS ATALLQKAAQ MGSTRTTPLP  360
PTTDFERSHN TLTTTMAAMT SPSGFITSNN NNQAFIQDYN ASGFNHHHGG EEAFDNTFSG  420
FLRTNADTTT AGSDTNKSGG GGEGLTRDFL GIRPLMSHNE ILSFVGLGNC INDAASDQLH  480
PKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-31175243371Zinc finger protein JACKDAW
5b3h_F2e-31175243371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128141KLKQRSNKEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180571e-149flower| leaf| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016584001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022560703.10.0protein indeterminate-domain 11 isoform X4
RefseqXP_022560704.10.0protein indeterminate-domain 11 isoform X4
RefseqXP_022560705.10.0protein indeterminate-domain 11 isoform X4
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A078IY050.0A0A078IY05_BRANA; BnaCnng28590D protein
STRINGBo5g132030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.10.0indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]