PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016511001
Common NameGSBRNA2T00016511001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 391aa    MW: 44077.1 Da    PI: 8.2623
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016511001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.3e-2481125145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrgr+r rks ++
  GSBRNA2T00016511001  81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSIDQ 125
                          79***************************************9875 PP
2QLQ63.17.2e-221651237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  GSBRNA2T00016511001 16 PFTPTQWQELENQALIYKYMVSGVPVPPELIFSIRR 51
                         9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-141551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.2E-161650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.4251651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.18281125IPR014977WRC domain
PfamPF088791.3E-2082122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MMSLSGNGGR TIERPPFTPT QWQELENQAL IYKYMVSGVP VPPELIFSIR RSLDSSLVSR  60
LLPHQSIGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE AYPDSKYCEK HMHRGRNRAR  120
KSIDQNQTTA PLTSPSLSFP NNNNPSPTLS SSSSTYSAAS SSPSIDAYSN INRLGVGSSN  180
SRGYFNNHSL DYPYPLSSPK QQQQQTLHHA SALSLHQNTS TDSQFNALAS ATDHKDFRYF  240
QGIGERAGVG AGERTFFPEA SRSFQDSPYH HQRPLATVMN DPYHSGTDHK VDHHHHTYSS  300
VSSSSQHDQD HHRQQQQQCF VMGADMFNKP TRTVFANTSR QDHQEEEEKD SSETKKSLHH  360
FFGEDWAQNK NNSDSWLDLS SHSRLDTGNL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.85460.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15960617}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016511001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1026380.0AY102638.1 Arabidopsis thaliana transcription activator (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022560653.10.0growth-regulating factor 5-like
SwissprotQ8L8A60.0GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A078IUU90.0A0A078IUU9_BRANA; BnaCnng28460D protein
STRINGBo5g131870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-170growth-regulating factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]