PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016453001
Common NameGSBRNA2T00016453001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 292aa    MW: 32978.1 Da    PI: 6.0758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016453001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd +l+ +++++G  +W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00016453001 15 KGPWLPEEDGKLISYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding55.61.3e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  GSBRNA2T00016453001  68 RGKFSQEEEETILNLHAVLGNK-WSMIASHLP-GRTDNEIKNFWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4551062IPR017930Myb domain
SuperFamilySSF466892.83E-2912109IPR009057Homeodomain-like
SMARTSM007175.1E-121464IPR001005SANT/Myb domain
PfamPF002495.5E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-241669IPR009057Homeodomain-like
CDDcd001672.23E-91762No hitNo description
PROSITE profilePS5129427.24763117IPR017930Myb domain
SMARTSM007171.7E-1667115IPR001005SANT/Myb domain
PfamPF002491.6E-1568113IPR001005SANT/Myb domain
CDDcd001673.17E-1270113No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2870118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRSPLSADE TGLKKGPWLP EEDGKLISYI HKHGHSSWSA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSQEEEETIL NLHAVLGNKW SMIASHLPGR TDNEIKNFWN THLKKKLIQM  120
GFDPMTHRPR TDDIFSSLSQ LMSLSNLRGL VDLQQQVPFE DQQALLNLQG EMANLQLLNY  180
LLQAPHLAMS SSNNNNPNEL NILNLLIKEN YNTNNLPSLK TLEENLFSQN NSPIWSHEPP  240
SLNQTMMPSH DPSPLGDDLV LNQASSSHEQ EVAATDSVDW PDHLFDDSMF P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and flowers. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016453001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196461e-176AY519646.1 Arabidopsis thaliana MYB transcription factor (At5g65230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628738.10.0PREDICTED: transcription factor MYB39
SwissprotQ9FJP21e-151MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A078J0270.0A0A078J027_BRANA; BnaCnng28250D protein
STRINGBo3g099390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-141myb domain protein 53
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]