PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00016411001
Common NameGSBRNA2T00016411001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 524aa    MW: 56150 Da    PI: 7.5526
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00016411001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.5e-083183482454
                          S--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          yp+ +++  LAk++gL+ +qV++WF N R +
  GSBRNA2T00016411001 318 YPTDTDKLVLAKQTGLSRNQVSNWFINARVR 348
                          9****************************87 PP
2BELL106.12.3e-34213282372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +e+ kkk+kL+s+l+e +krYkqy+eqlq+v++sFe+vaglg+a+pY+sl lka+S+hF+cLk+ai++q+
  GSBRNA2T00016411001 213 EEHGKKKSKLISMLDEAYKRYKQYYEQLQAVMGSFECVAGLGHAAPYASLTLKALSKHFKCLKTAITDQL 282
                          6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-62157280IPR006563POX domain
PfamPF075264.0E-33162279IPR006563POX domain
SMARTSM003893.3E-4268356IPR001356Homeobox domain
SuperFamilySSF466894.19E-11317359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-15318356IPR009057Homeodomain-like
CDDcd000861.19E-8318353No hitNo description
PROSITE profilePS5007110.689318352IPR001356Homeobox domain
PfamPF059202.0E-12318348IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MADAYEPYHI LQQSRRDKLR IPSLDSHFHF HHPPPPSFSG GGLFPLAAGG FHSNSNNHIS  60
NPSYSNFMGF LGGPSSSSSA AVTVAGDPSF NGELSSGDVL VFRPEPLSLS LSSHPRLAYD  120
PVVPGAVSSG FSRSAAEAAA AAVTVASRSS GPLGPFTGYA SILKGSRFLK PAQMLLDEFC  180
NVGRGVYTDK VMDDDDSSLL FDPTVETLCG VSEEHGKKKS KLISMLDEAY KRYKQYYEQL  240
QAVMGSFECV AGLGHAAPYA SLTLKALSKH FKCLKTAITD QLQFTNNKIQ QQCGHVMNSD  300
NKTDSLRFGG SDSGRDFYPT DTDKLVLAKQ TGLSRNQVSN WFINARVRVW KPMVEEIHML  360
ETRQSQRSSS SSWRDEHSTT VFPDNNNDNP SSSSAQQRAN NNSSPARRVR NHDVHGTNNN  420
NNNNFMNAGN GGSGGGAVSF SYGIASSNVP GMSNSTNGGV SLTLGLHHQI GLSEPFPMTT  480
AQRLGLDGGS SGGGGGGYDG QNRQFGRDFI GGSNHQFLHD FVG*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00016411001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022565996.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM80.0BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A078IUL40.0A0A078IUL4_BRANA; BnaA03g54930D protein
STRINGBra005703.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56882746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.10.0TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  5. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  6. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  7. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  8. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]