PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00016192001 | ||||||||
Common Name | GSBRNA2T00016192001, LOC106369061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 321aa MW: 36371.6 Da PI: 5.6832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +v+++G g W+t +++ g++R++k+c++rw +yl GSBRNA2T00016192001 15 KGAWTPEEDQKLTSYVNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T++E++ ++ +++++G++ W++Iar ++ gRt++++k++w+++ GSBRNA2T00016192001 68 RGEFTEDEELSIISLHALHGNK-WAAIARGLP-GRTDNEIKNYWNTH 112 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.606 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.862 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 70 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MVRTPCCRAE LGLKKGAWTP EEDQKLTSYV NRHGEGGWRT LPEKAGLKRC GKSCRLRWAN 60 YLRPDIKRGE FTEDEELSII SLHALHGNKW AAIARGLPGR TDNEIKNYWN THIKKRLIKK 120 GVDPVTHKNI SENLQDILEK RNINQTIITS DDDLDHNKKM EKSARFLNRV ANRFGKRINQ 180 SVLSEIIGSG GPHATITNNT TTITTSVTVD SKSDKSTSSS FTPTSNLLMT ANGNATSSPS 240 TFSESSINDR LMYWDKEDDI GFSTFLNDED FMVLEESCVE NTEFMKELTR FLGEDETDNV 300 EMMPVYEHQD SFEDIDNYFA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vegetative parts of the plant, mainly in mature rosette leaves and in trichomes. Detected in roots, but not in mature flowers or siliques. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor positively regulating indolic glucosinolate biosynthetic pathway genes. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00016192001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by touch or wounding. {ECO:0000269|PubMed:17461791, ECO:0000269|PubMed:23115560}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ584296 | 0.0 | FJ584296.1 Brassica rapa subsp. pekinensis MYB domain protein 51-1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009117607.1 | 0.0 | PREDICTED: transcription factor MYB51-like | ||||
Refseq | XP_013664615.1 | 0.0 | transcription factor MYB51 | ||||
Swissprot | O49782 | 1e-154 | MYB51_ARATH; Transcription factor MYB51 | ||||
TrEMBL | A0A078G8H2 | 0.0 | A0A078G8H2_BRANA; BnaA09g44500D protein | ||||
TrEMBL | M4EQG4 | 0.0 | M4EQG4_BRARP; Uncharacterized protein | ||||
STRING | Bra031035.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18570.1 | 1e-147 | myb domain protein 51 |
Link Out ? help Back to Top | |
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Entrez Gene | 106369061 |