PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015997001
Common NameGSBRNA2T00015997001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 281aa    MW: 30028.4 Da    PI: 6.9704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015997001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.5e-101155345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +W+ e+d  + +a + +  +    W++Ia+ ++ g++ +q+k+++ 
  GSBRNA2T00015997001 11 AWSREDDIAFERALANHTDEseeKWEKIAADVP-GKSVEQIKEHYE 55
                         7*****************99*************.**********96 PP

2Myb_DNA-binding40.75.6e-13100144347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W+++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  GSBRNA2T00015997001 100 AWSEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 144
                          6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.153762IPR017884SANT domain
SMARTSM007171.4E-8860IPR001005SANT/Myb domain
PfamPF002491.5E-81155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-51155IPR009057Homeodomain-like
CDDcd001671.43E-81158No hitNo description
SuperFamilySSF466891.87E-91265IPR009057Homeodomain-like
PROSITE profilePS5129417.87393149IPR017930Myb domain
SuperFamilySSF466893.52E-1694150IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-1797147IPR006447Myb domain, plants
SMARTSM007176.6E-1097147IPR001005SANT/Myb domain
PfamPF002495.5E-11100144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10100143IPR009057Homeodomain-like
CDDcd001671.52E-9100145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MTVEEVSDGS AWSREDDIAF ERALANHTDE SEEKWEKIAA DVPGKSVEQI KEHYELLVED  60
VGRIESGCVP LPSYRSPPED AGDDGGSSKR GGNKRRKGIA WSEDEHRLFL LGLDKYGKGD  120
WRSISRNFVV TRTPTQVASH AQKYFIRLNS MNKDRRRSSI HDITSVGDVD VSTPQGPITG  180
QNNNNNNAGS AAVAGGGNKS AKQPASQPTP GPPMYGTPTI GQPVSGPLVS AVGTPVNLPA  240
PPHMAYGVHS APVPGSVVPG APMNMAQMPY TMPRTPTAHR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-16976875RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.129501e-131microspore| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015997001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895541e-133AC189554.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006C14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612385.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_022565795.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-165SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A078G5260.0A0A078G526_BRANA; BnaC09g47470D protein
STRINGBo9g174380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-125MYB family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]