PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015930001
Common NameGSBRNA2T00015930001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 388aa    MW: 42362.8 Da    PI: 7.0186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015930001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13204249555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++e +k+Lq
  GSBRNA2T00015930001 204 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIENLKQLQ 249
                          9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-16197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.641199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-14204250No hitNo description
PfamPF000104.3E-11204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14204257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSQRGPNYHI DDTPAATVRS TKAADIPMLD YEVAELTWEN GQLGLHGLCP PRVPAPSKYS  60
TGAGGMLESI VDQATRFPNP KPADELVPSF HHRYSRVGMD ALVPEQQSQP ATGVGSCSDG  120
HPMDGGKRAR VAPEWSASGS QRLTIDTYGF TSTSLDVNSS SDGKPFTKTT NIDDHDSVEE  180
EEEEKQTGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE  240
VIENLKQLQA HVFMMSRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD  300
LSSMNRAATA TAPNIHANMI QNPFVPMTST SWDASSSTDP RFQSPLIPDP MSAFLACSLQ  360
PTTMEAYSRM AALYQQMQQQ LPPSNPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRD
2208213RKRRDK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015930001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172291e-177AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259711e-177BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693603.10.0transcription factor UNE10-like
SwissprotQ8GZ381e-172UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A078G9T30.0A0A078G9T3_BRANA; BnaC03g26990D protein
STRINGBra000560.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-139bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]