PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015686001
Common NameGSBRNA2T00015686001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 419aa    MW: 47703.7 Da    PI: 6.4182
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015686001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.82.6e-09131173446
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                          +k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++L+
  GSBRNA2T00015686001 131 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 173
                          7999**************************8888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-8121174No hitNo description
SMARTSM003380.0011128186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.347130172IPR004827Basic-leucine zipper domain
PfamPF077163.3E-5132177IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-6132174No hitNo description
PROSITE patternPS000360135150IPR004827Basic-leucine zipper domain
PfamPF141443.2E-28219293IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MKTRCRNFVI FFYWNILSSE CVSTRDSLFI SRLRDELSME MMSSSSSSTT QVVSLREMGM  60
YEPFQQLSGW ENAFNTIGTS NQNNNNNPSS STVPEVEADD NNKANYTSMY NNSVEAEPSS  120
NNDQDDDQIN DKMKRRLAQN REAARKSRLR KKAHVQQLEE SRLKLSQLEQ ELARARQQGL  180
CVRNSSDSSY LGPAGTMNTG IAAFEMEYTH WLEEQNKRVS EIRTALQAHI SDIELKMLVD  240
ICLNHYANLF RMKADAAKAD VFFLISGMWR TSTERFFQWI GGFRPSELLN VVMPYIEPLT  300
DQQLLEVRNL QQSSQQAEEA LSQGLDKLQQ GLVENIAVDI RVVESVSHGA QMASAMENLQ  360
ALEGFVNQAD HLRKQTLQQM SKILTTRQAA RGLLALGEYF HRLRALSSLW AARPRERT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.158251e-151leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015686001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1100980.0EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013748580.10.0transcription factor TGA3-like
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A078G7F10.0A0A078G7F1_BRANA; BnaA09g30910D protein
STRINGBra031364.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  6. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]