PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00015660001 | ||||||||
Common Name | GSBRNA2T00015660001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 717aa MW: 78914.2 Da PI: 5.8892 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL++ lgL+ q+k+WFqN+R+++k GSBRNA2T00015660001 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLGLEPLQIKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 215.4 | 1.9e-67 | 238 | 457 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++elv++a+ ++p+Wv+ e +n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + + GSBRNA2T00015660001 238 ELAVAAMEELVRMAQIGDPLWVSTDnsiEVLNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsR 326 57899******************999999*************999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a tlev+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++p + R +++pSg+li++++ng+ GSBRNA2T00015660001 327 ALTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWALVDVSLDSLRPNP----ISRTRRRPSGCLIQELPNGY 412 *****************************************************************9....69999*************** PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 skvtwveh+++++r++h ++++lv+sgla+ga++wv+tl+rqce+ GSBRNA2T00015660001 413 SKVTWVEHMEVDDRSVHTMYKPLVHSGLAFGARRWVSTLERQCER 457 *******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 44 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-18 | 50 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-18 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.22E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.819 | 229 | 460 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-35 | 231 | 459 | No hit | No description |
CDD | cd08875 | 1.05E-124 | 233 | 456 | No hit | No description |
SMART | SM00234 | 1.4E-74 | 238 | 457 | IPR002913 | START domain |
Pfam | PF01852 | 1.5E-56 | 239 | 457 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.9E-5 | 335 | 451 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.94E-25 | 477 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MYHPNMFESH HMFDMTTKST SDNDFGITGS REDDFETKSG TEVTTENPSG EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLG LEPLQIKFWF QNKRTQMKAQ 120 HERHDNQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPIGSS FAPLAINAPS RSLDLEVGNF GNQAVSIPSE SDKPMIIELA 240 VAAMEELVRM AQIGDPLWVS TDNSIEVLNE EEYFRTFPRG IGPKPLGLRS EASRESAVVI 300 MNHINLVEIL MDVNQWSCVF SGIVSRALTL EVLSTGVAGN YNGALQVMTA EFQVPSPLVP 360 TRENYFVRYC KQHSDGSWAL VDVSLDSLRP NPISRTRRRP SGCLIQELPN GYSKVTWVEH 420 MEVDDRSVHT MYKPLVHSGL AFGARRWVST LERQCERLAS SMASNIPASD LSVITSPEGR 480 KSMLKLAERM VMSFCSGVGA STAHAWTTMS STGSDDVRVM TRKSMDDPGR PPGIVLSAAT 540 SFWIPVAPKR VFDFLRDENS RSEWDILSNG GMVQEMAHIA NGREPGNCVS LLRVNSGNSS 600 QSNMLILQES CTDASGSYVI YAPVDIVAMN VVLSGGDPDY VALLPSGFAI LPDVVSSSTA 660 SESCGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAAVACD RGGGGP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00015660001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352868 | 0.0 | AK352868.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-J22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629800.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Refseq | XP_013629801.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A078G7D4 | 0.0 | A0A078G7D4_BRANA; BnaC03g30030D protein | ||||
STRING | Bo3g048340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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