PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00015633001

Common Name

GSBRNA2T00015633001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 508aa MW: 55747 Da PI: 6.9951

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00015633001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	279	337	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+Y+rCt+a gCpv+k+v+r+ae+ +++++tYeg+Hnh+ GSBRNA2T00015633001 279 SDGCHWRKYGQKMAKGNPCPRAYFRCTMAvGCPVRKQVQRCAEERSILITTYEGNHNHP 337 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-32	263	339	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-27	271	339	IPR003657	WRKY domain
PROSITE profile	PS50811	28.231	273	339	IPR003657	WRKY domain
SMART	SM00774	1.1E-35	278	338	IPR003657	WRKY domain
Pfam	PF03106	1.0E-25	280	337	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MFRFPVSLGG PHDNPKQPQS SDEQPHRAMM NEVDFFRSEK RDDENIITDE TNRVHVKREN 60 SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME EKRSKIENVQ LREELKKAAE 120 EIQRLKEMLS QTTNNFNSLQ MQLVAVMRQQ EDHHHLAMTG SKDIANKRHE GSEMVPRQFI 180 ELGLPTAEVS SEERTTVRSR SPPSLLENSS SRQRGKRLLE REESPETQSN GWGNPNKVSK 240 HNASSSNDNV SAIDQSTAEA TMRKARVSVR ARSEAPTLSD GCHWRKYGQK MAKGNPCPRA 300 YFRCTMAVGC PVRKQVQRCA EERSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS 360 TMSSQDGLMN PTNLFARTML PCSSSMATIS ASAPFPTITL DLTESASNFP QRSGFTELNQ 420 SGLPQMMGQA LYYNQQQSKF SGLQIPTQSL NAGESVSAAT AAIAANPNFA AALAAALTSI 480 INGPNNHKNG DSNNGNNNVR TSSVERQ*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MFRFPVSLGG PHDNPKQPQS SDEQPHRAMM NEVDFFRSEK RDDENIITDE TNRVHVKREN  60
SRVVDDDDRS TGINTGLNLL TAHTGSDESM VDDGLSVDME EKRSKIENVQ LREELKKAAE  120
EIQRLKEMLS QTTNNFNSLQ MQLVAVMRQQ EDHHHLAMTG SKDIANKRHE GSEMVPRQFI  180
ELGLPTAEVS SEERTTVRSR SPPSLLENSS SRQRGKRLLE REESPETQSN GWGNPNKVSK  240
HNASSSNDNV SAIDQSTAEA TMRKARVSVR ARSEAPTLSD GCHWRKYGQK MAKGNPCPRA  300
YFRCTMAVGC PVRKQVQRCA EERSILITTY EGNHNHPLPP AAMYMASTTT AAASMLLSGS  360
TMSSQDGLMN PTNLFARTML PCSSSMATIS ASAPFPTITL DLTESASNFP QRSGFTELNQ  420
SGLPQMMGQA LYYNQQQSKF SGLQIPTQSL NAGESVSAAT AAIAANPNFA AALAAALTSI  480
INGPNNHKNG DSNNGNNNVR TSSVERQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	265	341	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00015633001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ384110	0.0	FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623496.1	0.0	PREDICTED: probable WRKY transcription factor 42
Swissprot	Q9XEC3	0.0	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A078G7B7	0.0	A0A078G7B7_BRANA; BnaC03g29850D protein
STRING	Bra000793.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	0.0	WRKY family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]