PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00015476001

Common Name

GSBRNA2T00015476001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 271aa MW: 30643.8 Da PI: 9.0535

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00015476001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	127.4	1.1e-39	7	136	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 p+GfrF Pt+ el+++yL+ +++g + ++ + i+ +d+++veP + p+ ++++++++w fF++r++++a+g r++r+t+sgyWkatg GSBRNA2T00015476001 7 PVGFRFYPTEVELISFYLRIQLDGGHATIYSLIPILDVFNVEPTQVPNlageRCQGDREQWLFFVPRQEREARGGRPSRTTNSGYWKATG 96 79*************************999**********9656776777888*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + +v+s +++++g+kkt+vfy g+apkg+kt+W m+ey+ GSBRNA2T00015476001 97 SPGPVFSPDNRVIGVKKTMVFYIGKAPKGRKTKWKMNEYK 136 *************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-41	6	182	IPR003441	NAC domain
PROSITE profile	PS51005	43.417	6	183	IPR003441	NAC domain
Pfam	PF02365	6.7E-20	7	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MVEELPPVGF RFYPTEVELI SFYLRIQLDG GHATIYSLIP ILDVFNVEPT QVPNLAGERC 60 QGDREQWLFF VPRQEREARG GRPSRTTNSG YWKATGSPGP VFSPDNRVIG VKKTMVFYIG 120 KAPKGRKTKW KMNEYKAIDE TASVSTIPKV RNHFGFNMFY TYNPVLTCYS LRHKFSVCRI 180 YIKSGSSRAF DRRPTEEMIA GISQLLERKL PNNGVETSSC ATISTSPETS YSGGGDQVQL 240 PVNVTTTQRI SDMVDGLSQP FWEWEQLNWS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-29	5	139	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-29	5	139	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-29	5	139	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-29	5	139	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	2e-29	5	139	20	147	NAC domain-containing protein 19
3swm_B	2e-29	5	139	20	147	NAC domain-containing protein 19
3swm_C	2e-29	5	139	20	147	NAC domain-containing protein 19
3swm_D	2e-29	5	139	20	147	NAC domain-containing protein 19
3swp_A	2e-29	5	139	20	147	NAC domain-containing protein 19
3swp_B	2e-29	5	139	20	147	NAC domain-containing protein 19
3swp_C	2e-29	5	139	20	147	NAC domain-containing protein 19
3swp_D	2e-29	5	139	20	147	NAC domain-containing protein 19
4dul_A	2e-29	5	139	17	144	NAC domain-containing protein 19
4dul_B	2e-29	5	139	17	144	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00015476001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL138641	4e-85	AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBank	CP002686	4e-85	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013681272.1	1e-175	putative NAC domain-containing protein 61
Swissprot	Q9M290	1e-128	NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBL	A0A078G750	0.0	A0A078G750_BRANA; BnaC03g53950D protein
STRING	Bra019459.1-P	1e-165	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-141	NAC domain containing protein 61

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]