PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00015423001 | ||||||||
Common Name | GSBRNA2T00015423001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 695aa MW: 78144.2 Da PI: 5.4402 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.4 | 4.4e-17 | 23 | 78 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ +++t +q+++Le++F ++++p +++r L ++l+L+ +q+k+WFqN+R++ k GSBRNA2T00015423001 23 KRTYRRHTFQQTQRLEAYFMECPNPEESQRLSLGEELNLEPDQIKFWFQNKRTQNK 78 6888999**********************************************998 PP | |||||||
2 | START | 66.9 | 5.7e-22 | 222 | 395 | 9 | 165 |
HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 e++k+ ++e++Wv ss + + +e++ kf+ s ++e +++++vv+ ++++l e +ld+ +W+ ++ ka+t+ ++ GSBRNA2T00015423001 222 EELKRLFVTEDLWVMSSidgTYVIDQESYEKFSHSIKhfrklsARVESSKDVTVVPIEATNLIEMFLDSE-KWKSLFPtivaKAMTIHKL 310 77888899*********988777788888888776668899999**************************.99999999999******** PP CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 s + lq++ +l lsplvp R+f++vR++++ +g w+++dvS ++ + ++ + ++pSg+li+ ++ hs+ GSBRNA2T00015423001 311 GSElpinencNNLQVIWEKLHILSPLVPpREFMIVRCCQKIDEGIWIVADVSQRIVDSDQI--NSF-CYKRPSGCLIRAFPGAHSEAC 395 ****************************************************666666654..222.578*********999997653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 8 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.55E-16 | 8 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.953 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-13 | 22 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.43E-13 | 23 | 80 | No hit | No description |
Pfam | PF00046 | 1.2E-14 | 23 | 78 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 20.046 | 206 | 436 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.63E-17 | 208 | 393 | No hit | No description |
SMART | SM00234 | 0.0025 | 214 | 433 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.6E-5 | 214 | 374 | IPR023393 | START-like domain |
Pfam | PF01852 | 3.8E-16 | 221 | 394 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.97E-11 | 456 | 656 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MDHNDGGNSS SEHTSVNAKK REKRTYRRHT FQQTQRLEAY FMECPNPEES QRLSLGEELN 60 LEPDQIKFWF QNKRTQNKTQ IERNANILLR EENKKIKCEN EAMLEALRIV TCPDCGGPPL 120 GVERGHNFQN LSLVNTFLTE QRDEMANTVS MNQHQQNMVN LFASVQGQQI FDTHTSYGTI 180 PNSLMNDPSN SVGSSTSQDI QLQLISQMDI TQLSETATRA VEELKRLFVT EDLWVMSSID 240 GTYVIDQESY EKFSHSIKHF RKLSARVESS KDVTVVPIEA TNLIEMFLDS EKWKSLFPTI 300 VAKAMTIHKL GSELPINENC NNLQVIWEKL HILSPLVPPR EFMIVRCCQK IDEGIWIVAD 360 VSQRIVDSDQ INSFCYKRPS GCLIRAFPGA HSEACLHCLD LTCFSILKIE LLCGGSGYGA 420 KRWTTTLERM CERMALSSIL TIPATDWSEA IATVEGRMSV MKLGERMVMN FNEMLTMSGK 480 VDFPQQSKCG VRISIRMNHD SGQPSGLVVS AASSFSVPIT PLQVFDSLLN NETRHQWDVL 540 CYRSAVSVTA RILTGYNENN YITILQPTQR EDDVISMSQG PTRNMMMLQE CYMDALGGMI 600 VYAPLDMASM SLATSGEVDP LKIPILSSGF TISNDGRRSM VAEEGGTILT VVFQILVSED 660 RRIRGLTEQS VDTVTSLISS TVRNIKLLLN CPLE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the embryo at early stage and in the endosperm. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00015423001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009119199.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG8-like isoform X1 | ||||
Swissprot | Q9M9P4 | 0.0 | HDG8_ARATH; Homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | A0A078G715 | 0.0 | A0A078G715_BRANA; BnaA01g34420D protein | ||||
STRING | Bra021363.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12791 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03260.1 | 0.0 | homeodomain GLABROUS 8 |
Publications ? help Back to Top | |||
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