PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00015227001
Common NameGSBRNA2T00015227001, LOC106382381
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 189aa    MW: 20480 Da    PI: 4.7935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00015227001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-171362155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+ +l+g
  GSBRNA2T00015227001 13 PVYRGIR-CR-SGKWVCEIREPKK---TTRIWLGTYPTAEMAAAAYDVAAIALKG 62
                         68****9.55.6*********854...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-101362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-271470IPR001471AP2/ERF domain
SMARTSM003802.4E-271476IPR001471AP2/ERF domain
PROSITE profilePS5103220.0861470IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-181471IPR016177DNA-binding domain
CDDcd000181.28E-161570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MATNGLASRK KDPVYRGIRC RSGKWVCEIR EPKKTTRIWL GTYPTAEMAA AAYDVAAIAL  60
KGREALLNFP GSVGSYPVPL STSAADIRSA AAAAASMKGC EEEEENAKKK SSSFSKSRSS  120
DFHVHDDMMA SSSSRCVIDF MDEEELLNMP NFLADMAEGM MVAPPSWIGS HPSDDSPENF  180
NDEDLWGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-141175268ATERF1
3gcc_A4e-141175268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00015227001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677857.11e-138ethylene-responsive transcription factor ERF027
SwissprotQ38Q391e-73ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLA0A078G6N71e-136A0A078G6N7_BRANA; BnaA08g24660D protein
TrEMBLA0A397YEX51e-136A0A397YEX5_BRACM; Uncharacterized protein
STRINGBra016761.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.16e-67ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]