PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00015108001 | ||||||||
Common Name | GSBRNA2T00015108001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 288aa MW: 33114 Da PI: 9.8002 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.5e-16 | 27 | 119 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk++ +d +++++ +p +f+++ ++ s +++++++g sWevk+ + +++ y+ ++GW++Fv++n L +++ v+F++++ ++ GSBRNA2T00015108001 27 FFKIFQGEDLSSESMRAFPYDFIRNVPQND-YSSNMVIRTQWGISWEVKV--SMNPRFyYMEKRGWNQFVNDNALGDKELVTFTHTRLMC 113 89999999***************8885444.45589**************..999999566669********************987699 PP E..EEEEE CS B3 90 felvvkvf 97 f +v ++ GSBRNA2T00015108001 114 F--NVNIY 119 9..66665 PP | |||||||
2 | B3 | 44.2 | 3.4e-14 | 197 | 277 | 12 | 94 |
HTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ++ l +p+ fa+ h ++++++ +t+ +++g sWev + ++ r +++GW + v++ L +gDf++Fk+++ +ef+lvv GSBRNA2T00015108001 197 YLKFLPIPRYFADVHI-PNKSKMVVTIHHSNGnCSWEVVC--LVRRARANFSSGWARLVREYPLSVGDFCTFKFIKPTEFHLVV 277 445689******8884.33466788888888779******..666666779************************999998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.02E-16 | 21 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 23 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.85E-14 | 26 | 119 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 27 | 122 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-14 | 27 | 119 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-18 | 27 | 122 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.06E-19 | 183 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-16 | 183 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.237 | 186 | 281 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.01E-11 | 187 | 279 | No hit | No description |
SMART | SM01019 | 3.6E-15 | 189 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-12 | 195 | 278 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MMFPKEREIG SSSGLGQGEV NVEKLSFFKI FQGEDLSSES MRAFPYDFIR NVPQNDYSSN 60 MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTR LMCFNVNIYE 120 ENGKELVRPR TMASLSGIKK EVGESSKKDV KKAEETGGVR VKSKRFEEGK TSKKKMKKSN 180 NDEDTVPVFN ITITTSYLKF LPIPRYFADV HIPNKSKMVV TIHHSNGNCS WEVVCLVRRA 240 RANFSSGWAR LVREYPLSVG DFCTFKFIKP TEFHLVVSKK VEEIMSD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00015108001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022546134.1 | 0.0 | B3 domain-containing protein At3g17010-like | ||||
Swissprot | Q9LSP6 | 2e-95 | Y3701_ARATH; B3 domain-containing protein At3g17010 | ||||
TrEMBL | A0A078G678 | 0.0 | A0A078G678_BRANA; BnaA08g25640D protein | ||||
TrEMBL | A0A3P6C440 | 0.0 | A0A3P6C440_BRACM; Uncharacterized protein | ||||
STRING | Bra018430.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17010.1 | 2e-92 | B3 family protein |
Publications ? help Back to Top | |||
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