PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00014810001

Common Name

GSBRNA2T00014810001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 276aa MW: 31464.1 Da PI: 9.1209

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00014810001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.4	4.6e-12	31	111	12	97
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ ++p +f+++ g + l++ ++g+sW+v l + +++ ++ ++ W+eFv++n L+ +D+++F++++++ + v+++ GSBRNA2T00014810001 31 SKSMRIIPEEFVRSAHGA--FEHRLVFSVSWGNSWQVWL--HRDKNGlFMEEEDWNEFVDDNLLCPNDILLFTHVDTMFT--EVRIY 111 456789****999655..3446***********..66666659999*******************9987666..55555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.12E-14	16	113	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.9E-13	16	113	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.72E-11	17	112	No hit	No description
SMART	SM01019	2.5E-12	19	114	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.8	20	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-9	31	109	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.51E-6	175	262	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.7E-5	176	266	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.019	182	274	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MALNGVFDFL QENVKKPRFC KSLPLGENWK SKSMRIIPEE FVRSAHGAFE HRLVFSVSWG 60 NSWQVWLHRD KNGLFMEEED WNEFVDDNLL CPNDILLFTH VDTMFTEVRI YKKDLPFFKQ 120 VISAPQVLNP KPKAPSSAPP GFAPFASSAS ASGKTITSRA RQSSSPVQNP EQYLVNPQNP 180 YFVKTLSKKI DVLYVNQEVI QRYGLKFGPH LSLVHYLLPG EKHEAVIKIY RNAPCFNRWA 240 AICKKYNKKE GDSVVCELER SSGVVTAVRV HFVDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00014810001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189520	1e-124	AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013621349.1	0.0	PREDICTED: B3 domain-containing protein At5g25470-like
Refseq	XP_013675348.1	0.0	B3 domain-containing protein At5g25470-like
Swissprot	Q680D9	1e-98	Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBL	A0A078IU95	0.0	A0A078IU95_BRANA; BnaC02g48650D protein
STRING	Bo2g158640.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4491	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25470.2	1e-95	B3 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]