PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014742001
Common NameGSBRNA2T00014742001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 294aa    MW: 32054.2 Da    PI: 9.1899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014742001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-18115165256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  GSBRNA2T00014742001 115 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 165
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-15114174No hitNo description
SMARTSM003803.3E-35115178IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22115172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-31115173IPR001471AP2/ERF domain
PROSITE profilePS5103223.235115172IPR001471AP2/ERF domain
PRINTSPR003674.7E-10116127IPR001471AP2/ERF domain
PfamPF008471.1E-12116165IPR001471AP2/ERF domain
PRINTSPR003674.7E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEESNDVFQT KFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSLESS TTSLDTLNPP  60
PQQLGSSVYL QQRDLIERLH IQNRAVSTPP PPPLFSSSAA FAASLAAGTA KRKKLYRGVR  120
QRHWGKWVAE IRLPQNRMRV WLGTYETAEA AAYAYDRAAY KLRGEYARLN FPNLKDPTEL  180
LGLGDSSKLI ALKNAVDGKI QTICQRVRRE RAKKSGKGSK DSSTATADSS YSSSSEILSS  240
PAEAVTATVK SYPATTTSTA EEEDTMMGVD TDGFLLARMP SFDPELIWEV LAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20114172160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19114172463ATERF1
3gcc_A1e-19114172463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.43370.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014742001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666891e-129AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287631e-129AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608761e-129AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330821e-129BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026841e-129CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112883.11e-169PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-136ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A078JYE80.0A0A078JYE8_BRANA; BnaAnng37390D protein
STRINGBra027697.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.17e-88ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]