PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00014670001 | ||||||||
Common Name | GSBRNA2T00014670001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 682aa MW: 76369.3 Da PI: 7.5677 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89 | 4e-28 | 425 | 475 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ GSBRNA2T00014670001 425 EKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 475 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.041 | 411 | 495 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-25 | 428 | 475 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:3.10.20.240 | 1.1E-17 | 591 | 677 | No hit | No description |
PROSITE profile | PS51745 | 21.308 | 593 | 680 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.6E-19 | 593 | 680 | IPR000270 | PB1 domain |
CDD | cd06407 | 9.65E-34 | 594 | 677 | No hit | No description |
SuperFamily | SSF54277 | 9.53E-18 | 594 | 678 | No hit | No description |
Pfam | PF00564 | 8.8E-15 | 595 | 678 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006107 | Biological Process | oxaloacetate metabolic process | ||||
GO:0006108 | Biological Process | malate metabolic process | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0050152 | Molecular Function | omega-amidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MLMQMEESNN SGVVDFPENF MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG 60 GEKELLIQLW VPVERGMRRV LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL 120 VGLPGRVFLN RMPEWTPDVR FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM 180 ITTHPSLEYG SQLHTIHHAL QAFDLRSSET SIVPTSLKPH TDDDLHREVA SILKGICISY 240 GLPLAITWGH QQDSCLSAIV SASYASDQNS RSFLDACSEH HLVAKEGIAG RAFATKKQYI 300 AKDVAILSYP LSHYAKMFDL HAALAIPLLT RYSRNVQFVL EFFFPRDYYC LINQRPILLA 360 SQLSLRFQSS PHLMVDDDQL KLAECMSRKG KGKDVSVSWE MREPSSFSSS SSSCLESRKR 420 KRRDEKDITL DILRQHFAGS LKDAAKNIGV CPTTLKRICR QHGISRWPSR KIKKVGHSLR 480 KLQVVMDSVE GVQGSHHLAS FYSSFPQLQS PLQLDPTKTV AKSPPPSSSS SSGSSTCCSS 540 EEKDKQLGGG FHKPSSQVLL TLGSSLMKDE QRPVRATSSL PPLPSARKAK DAGMKVHAMF 600 GDSKMRMRLK HHWGIADLRR EIAKGFGMDD DALTSNFTLK YMDDDEEWVL LTCDADLEEC 660 IQIYKSSLYK ETVRISVSSL L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 417 | 422 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00014670001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009101950.1 | 0.0 | PREDICTED: protein NLP3 isoform X2 | ||||
Swissprot | Q9SVF1 | 0.0 | NLP3_ARATH; Protein NLP3 | ||||
TrEMBL | A0A078IZE0 | 0.0 | A0A078IZE0_BRANA; BnaA06g40940D protein | ||||
TrEMBL | M4EXM4 | 0.0 | M4EXM4_BRARP; Uncharacterized protein | ||||
STRING | Bra033561.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15287 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38340.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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