PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014670001
Common NameGSBRNA2T00014670001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 682aa    MW: 76369.3 Da    PI: 7.5677
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014670001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK894e-28425475252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  GSBRNA2T00014670001 425 EKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 475
                          799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.041411495IPR003035RWP-RK domain
PfamPF020423.6E-25428475IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2401.1E-17591677No hitNo description
PROSITE profilePS5174521.308593680IPR000270PB1 domain
SMARTSM006662.6E-19593680IPR000270PB1 domain
CDDcd064079.65E-34594677No hitNo description
SuperFamilySSF542779.53E-18594678No hitNo description
PfamPF005648.8E-15595678IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006107Biological Processoxaloacetate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050152Molecular Functionomega-amidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MLMQMEESNN SGVVDFPENF MDQLLWEECR GEEEEVSLWS SLGLKERVTC AMGHLQEVMG  60
GEKELLIQLW VPVERGMRRV LSTEEQPYSL NLFSQSQSLA LYRDISAGYS FAAEVGSDQL  120
VGLPGRVFLN RMPEWTPDVR FFRSEEYLRI GYAHRCQVRA SLALPLFQGP SGTCMGVLEM  180
ITTHPSLEYG SQLHTIHHAL QAFDLRSSET SIVPTSLKPH TDDDLHREVA SILKGICISY  240
GLPLAITWGH QQDSCLSAIV SASYASDQNS RSFLDACSEH HLVAKEGIAG RAFATKKQYI  300
AKDVAILSYP LSHYAKMFDL HAALAIPLLT RYSRNVQFVL EFFFPRDYYC LINQRPILLA  360
SQLSLRFQSS PHLMVDDDQL KLAECMSRKG KGKDVSVSWE MREPSSFSSS SSSCLESRKR  420
KRRDEKDITL DILRQHFAGS LKDAAKNIGV CPTTLKRICR QHGISRWPSR KIKKVGHSLR  480
KLQVVMDSVE GVQGSHHLAS FYSSFPQLQS PLQLDPTKTV AKSPPPSSSS SSGSSTCCSS  540
EEKDKQLGGG FHKPSSQVLL TLGSSLMKDE QRPVRATSSL PPLPSARKAK DAGMKVHAMF  600
GDSKMRMRLK HHWGIADLRR EIAKGFGMDD DALTSNFTLK YMDDDEEWVL LTCDADLEEC  660
IQIYKSSLYK ETVRISVSSL L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417422RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014670001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101950.10.0PREDICTED: protein NLP3 isoform X2
SwissprotQ9SVF10.0NLP3_ARATH; Protein NLP3
TrEMBLA0A078IZE00.0A0A078IZE0_BRANA; BnaA06g40940D protein
TrEMBLM4EXM40.0M4EXM4_BRARP; Uncharacterized protein
STRINGBra033561.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152871718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.10.0Nin-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]