PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00014340001
Common NameGSBRNA2T00014340001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 544aa    MW: 59825.3 Da    PI: 7.4453
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00014340001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08229249526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  GSBRNA2T00014340001 229 PCPEFRK-GSCPKGDSCEYAHG 249
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.66E-136150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.48645154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0224575IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.207.0E-1546156IPR020683Ankyrin repeat-containing domain
PfamPF136372.3E-54798No hitNo description
CDDcd002049.28E-1347143No hitNo description
SMARTSM002480.3780112IPR002110Ankyrin repeat
SMARTSM002481500116151IPR002110Ankyrin repeat
SMARTSM003566.3E-5224250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976224251IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5229249IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-6229250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4256288IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.981259283IPR000571Zinc finger, CCCH-type
SMARTSM0035662259282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MGLLEYAACD DLPSFQREIE EKGLDLDEPG LWYCKKLGSN KMGLEQRTPL MVAAMYGSKK  60
VLTFIVSTGK SDVNRACGEE RVTALHCAVA GCSVNMVEVI NALLDASASA NAVDANGNQP  120
LDLFVKVSRF VASPRKKAVE LLLRGGGMIN EAVEEEEEEV KIVSKYPADA SLPDINEGVY  180
GSDEFRMYSF KVKPCSRAYS HDWTECAFVH PGENARRRDP RKYPYTCVPC PEFRKGSCPK  240
GDSCEYAHGV FESWLHPAQY KTRLCKDEAG CARKVCFFAH KREEMRPVNA STGSAVSQSP  300
LEMMPGLYSS GVATRPVSPM SSSVGSSPRN GGSWQNRVNS LSPPALHLNG GSRLKSTLSA  360
RDMDMEMELE MRLRGFNNVE ETFGSYVSSP SRNSQMSHQH YPSSPVRQQQ PPPHHFDSSA  420
AVAAAVMNAR SSAFAKRSLS FKPQVASSPS NLSDWGSPSG KLDWGVQGDE LSKMRRSVSF  480
GIHGDNNGNN AGRDYRNEPD VSWVNSLVKD SVVSERGGFG MNERVRIMSW AEQMYREKEQ  540
TVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.185610.0flower| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00014340001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116292.10.0PREDICTED: zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLA0A078IZK90.0A0A078IZK9_BRANA; BnaA05g28580D protein
TrEMBLA0A3P5Y5G10.0A0A3P5Y5G1_BRACM; Uncharacterized protein
STRINGBra007205.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]