PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00014148001 | ||||||||
Common Name | GSBRNA2T00014148001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 287aa MW: 32027 Da PI: 5.1998 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51 | 3.1e-16 | 202 | 261 | 2 | 61 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++ +r+rr++kNRe+A rsR+RK+a++ eLe+ ++ Le+eN++L e+ee +ke ++ + GSBRNA2T00014148001 202 AAAQRQRRMIKNRESAARSRERKQAYQVELETLAARLEEENEKLSVEIEEKRKERYQKLM 261 5789**********************************************9999887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.9E-14 | 199 | 256 | No hit | No description |
SMART | SM00338 | 1.0E-11 | 201 | 265 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-15 | 202 | 262 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.277 | 203 | 255 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.69E-10 | 205 | 257 | No hit | No description |
CDD | cd14707 | 4.89E-19 | 205 | 251 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 208 | 223 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MASFKVMHSS TSTNSDPSRR IPSSSIRPQP FRRDPNARIL GGYDGYSPGT MTVEGILHET 60 FASDPPATDS SLLMDAAPTP MEVATVSGGT DTRGKSVDEV WREIVSGEGK GMKEEAETQH 120 DEMMTLEDFL AKATCEDGGG ESDDVDVKIP PESYGFDHHN PFQMIDKVEG SIVAFGNGVD 180 VYGGGGARGK RARVMMEPLD KAAAQRQRRM IKNRESAARS RERKQAYQVE LETLAARLEE 240 ENEKLSVEIE EKRKERYQKL MEFLIPVVEK PKQEPRFLRR IRSLEW* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.1578 | 0.0 | leaf| microspore-derived embryo| seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00014148001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189402 | 0.0 | AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013706430.1 | 0.0 | G-box-binding factor 4-like | ||||
Swissprot | P42777 | 3e-71 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A078ITJ7 | 0.0 | A0A078ITJ7_BRANA; BnaCnng27030D protein | ||||
STRING | Bo7g067030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3852 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-91 | bZIP family protein |
Publications ? help Back to Top | |||
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