PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00014035001

Common Name

GSBRNA2T00014035001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 271aa MW: 30376.7 Da PI: 5.1298

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00014035001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.7	2.6e-08	129	175	8	54
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 + + +NRe+A rs ++K eLe+kv++Le++ + L el+ k GSBRNA2T00014035001 129 KIALSNRESAARSKEKKALHESELEDKVETLETQIDILTAELKLEKR 175 55789**********************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-7	118	176	No hit	No description
SMART	SM00338	4.3E-8	122	186	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.65E-8	126	177	No hit	No description
Pfam	PF07716	5.6E-7	133	175	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDGHADIPPS HSGLSQYPRA NPFGDESSNR ATMPPPSGSS LPPFPLRLRI PPTGQPFQFG 60 SQNFIPGSSP SQSMLSQVPH TMLDSSSIGS GSSQPSSVFS GLFNADQLSK IAASNELKEM 120 AESDPKHLKI ALSNRESAAR SKEKKALHES ELEDKVETLE TQIDILTAEL KLEKRERMTA 180 DDECVQFRIR LHAGEAHARL REDLIEQLNG EVRRLTEEAS GQREEMSRLR EEVSEYRRRE 240 SERMNANMLE QLNINQQFQE KPQQTNYNFE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00014035001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013635438.1	0.0	PREDICTED: transcription factor VIP1-like
Refseq	XP_013635439.1	0.0	PREDICTED: transcription factor VIP1-like
TrEMBL	A0A078JX80	0.0	A0A078JX80_BRANA; BnaAnng36910D protein
STRING	Bra030310.1-P	4e-98	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23502	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-26	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]