PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00014034001

Common Name

GSBRNA2T00014034001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 219aa MW: 25131.1 Da PI: 10.3373

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00014034001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.6	8.5e-17	19	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 f k++ +d +++++ ++p + +++ + + s ++++ ++g sWev + +k+++ y+ ++GW++Fv++n L ++fv+F+++g+++ GSBRNA2T00014034001 19 FSKTFACADLSSECMRTFPFDLMKSLPK-EDLSNKMVIIAKWGSSWEVDI--SKNPRFyYMEKSGWNQFVRDNALGKNEFVTFTHKGSMC 105 6788888899999999999999988853.458889*************..**566669********************9999 PP E..EEEE CS B3 90 felvvkv 96 f v + GSBRNA2T00014034001 106 F--DVNI 110 9..5544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-16	13	114	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.59E-17	14	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.66E-14	18	111	No hit	No description
PROSITE profile	PS50863	11.617	19	114	IPR003340	B3 DNA binding domain
SMART	SM01019	8.4E-17	19	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.3E-14	19	109	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDMNSWFDRV KEDRKNLSFS KTFACADLSS ECMRTFPFDL MKSLPKEDLS NKMVIIAKWG 60 SSWEVDISKN PRFYYMEKSG WNQFVRDNAL GKNEFVTFTH KGSMCFDVNI YGKDEKEIVR 120 PPTMASSSGI KQEQGASMEG VEFEATEKKA EESKRKIKKV VNPVEIGESS RGVKKVKRGR 180 VRVKNGVPEF EITIKRSGLG HVVRFLIYKR FKKLSIKI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00014034001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009141415.1	1e-135	PREDICTED: B3 domain-containing protein At3g17010-like
Refseq	XP_009141417.1	1e-135	PREDICTED: B3 domain-containing protein At3g17010-like
TrEMBL	A0A078JUU2	1e-158	A0A078JUU2_BRANA; BnaAnng36900D protein
STRING	Bra021943.1-P	1e-134	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	9e-49	B3 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]