PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00014031001 | ||||||||
Common Name | GSBRNA2T00014031001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 128aa MW: 14511.7 Da PI: 9.5036 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33.5 | 1.2e-10 | 2 | 30 | 100 | 128 |
NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kkt+vfy+g+ap+g+kt+W m+ey++ GSBRNA2T00014031001 2 IGVKKTMVFYTGKAPTGRKTKWKMNEYKA 30 79*************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.264 | 1 | 55 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-4 | 2 | 29 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-12 | 2 | 55 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MIGVKKTMVF YTGKAPTGRK TKWKMNEYKA VDETFNVSIV PKLRHEFSLC RVYVTSGNSR 60 AFDRRPMGIF QAERMLTRDV AVGERSVRVE SSPEASMSGG HGYLFVNGEM VDGLTEPIWE 120 WEQLSWP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00014031001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610715.1 | 2e-89 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 3e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A078K0K1 | 7e-90 | A0A078K0K1_BRANA; BnaUnng04300D protein | ||||
STRING | Bo9g148540.1 | 9e-89 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-66 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|