PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013941001
Common NameGSBRNA2T00013941001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 422aa    MW: 46731.9 Da    PI: 6.7535
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.28.8e-129404211374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsP 89 
                          l++lL+++A+++s+++ ++aq++L+ l  ++sp+gd+++Rl++ ft+AL+ r+    se +++ +++e +++++ ++ + + l +++++P
  GSBRNA2T00013941001  40 LRRLLFTAADFISQSNVSAAQNILSILTSNSSPYGDSTERLVHLFTKALSVRIGL--SENAATWTTNEMTSSTVFTSSSCYYLwLNQLTP 127
                          689**************************************************97..333334444444444444444444447****** PP

                 GRAS  90 ilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAe 170
                          +++fshltaNqaIl+a+e++    ++Hi+D+disqGlQWp+L+qaLa+R+       +ppslRiTg+g+    + + l++tg+rL++fA+
  GSBRNA2T00013941001 128 FIRFSHLTANQAILDATETNngnGALHILDLDISQGLQWPPLMQALAERSssnpssTPPPSLRITGCGR----DVTVLNRTGDRLTRFAN 213
                          ******************9888799************************97766655699*********....***************** PP

                 GRAS 171 elgvpfefnvlvak..rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                          +lg++f+f++lv    +l+ l  +++ L+++   gE++aVn+v+ lhr++++ +++     ++L+++ksl+P++v+++e+ea+h+++sF+
  GSBRNA2T00013941001 214 SLGLQFQFHTLVIAeeDLAGLllQIRLLALSAvqGESIAVNCVHFLHRFFNDAGDMIG---HFLSAIKSLNPRIVTMAEREANHGDPSFV 300
                          **********944312443223366666665556****************99999999...***************************** PP

                 GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                          +rf+eal++++a+fdslea+lp++s+er ++E++++g ei +vva+e aer++rh+++e W+e++++ GF +vp++++a +qaklllr +
  GSBRNA2T00013941001 301 NRFSEALDHFMAIFDSLEATLPPNSRERLTLEQRWFGMEILDVVAAEAAERKQRHRRFEVWEEMMKRHGFANVPIGSFAFSQAKLLLRLH 390
                          ****************************************************************************************** PP

                 GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          + s+gy+++  ++sl+lgWk+r L+svS+W+
  GSBRNA2T00013941001 391 YpSEGYNLQFLNDSLFLGWKNRLLFSVSSWK 421
                          ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.39414400IPR005202Transcription factor GRAS
PfamPF035143.0E-12640421IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLASFKSSSS SSEDATENPP PPPPLCLASS SAATSAAHHL RRLLFTAADF ISQSNVSAAQ  60
NILSILTSNS SPYGDSTERL VHLFTKALSV RIGLSENAAT WTTNEMTSST VFTSSSCYYL  120
WLNQLTPFIR FSHLTANQAI LDATETNNGN GALHILDLDI SQGLQWPPLM QALAERSSSN  180
PSSTPPPSLR ITGCGRDVTV LNRTGDRLTR FANSLGLQFQ FHTLVIAEED LAGLLLQIRL  240
LALSAVQGES IAVNCVHFLH RFFNDAGDMI GHFLSAIKSL NPRIVTMAER EANHGDPSFV  300
NRFSEALDHF MAIFDSLEAT LPPNSRERLT LEQRWFGMEI LDVVAAEAAE RKQRHRRFEV  360
WEEMMKRHGF ANVPIGSFAF SQAKLLLRLH YPSEGYNLQF LNDSLFLGWK NRLLFSVSSW  420
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-614742026378Protein SCARECROW
5b3h_A5e-614742025377Protein SCARECROW
5b3h_D5e-614742025377Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the axils of leaf primordia and leaves from P1 to P20/22. In the axil of P1, expressed in 3 to 5 cell layers including the L1 to L3 layers of the shoot apical meristem (SAM). Then, extends from 1 or 2 cell layers in the adaxial-abaxial dimension. From P5 to P22, expression is restricted to a 1 to 2 cell-layer domain located within primordium. In the axils of older leaf primordia, expression decreases until it is no longer detectable in the axils of primordia older than P20/P22. {ECO:0000269|PubMed:12730136}.
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013941001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3242340.0HQ324234.1 Brassica oleracea cultivar T9 transcription factor LAS (LAS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646262.20.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A078IWJ70.0A0A078IWJ7_BRANA; BnaC06g07300D protein
STRINGBo6g034670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]