PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00013788001 | ||||||||
Common Name | GSBRNA2T00013788001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 149aa MW: 16905 Da PI: 9.8234 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 75.3 | 1.2e-23 | 4 | 85 | 1 | 77 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+v GSBRNA2T00013788001 4 SCNGCRVLRKGCSDDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSV 85 6*******************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.734 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-19 | 4 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVCYELI CVNFFVKLHY QTNLRWSCPL YYPKYSYKRS 120 LLRRLSRLLI VKSSNIPDDL TVSLLRII* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.2282 | 1e-133 | seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00013788001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY208877 | 1e-130 | AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623465.1 | 5e-58 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-56 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A078IWC8 | 1e-104 | A0A078IWC8_BRANA; BnaC01g42010D protein | ||||
STRING | Bo3g055690.1 | 2e-57 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-59 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
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