PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00013604001 | ||||||||
Common Name | GSBRNA2T00013604001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 137aa MW: 15864 Da PI: 6.5133 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 8 | 96 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk l + s+ l++p f+ ++ +g +e + t +l++ s +Wevk+ + + + lt+GWkeF+ a++L gD+++F+ ++++ f GSBRNA2T00013604001 8 FFKPL--VPGFHSH-LTIPVAFFLKYiEGRNEHKNTARLRSdASKITWEVKI--EDG-Q--KLTDGWKEFAIAHDLHIGDILIFRQEKDMAF 91 56666..4456666.************666667779***9968889******..333.2..4***********************7776777 PP ..EEEEE CS B3 91 elvvkvf 97 +v+++ GSBRNA2T00013604001 92 --HVTLL 96 ..77765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 4 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.914 | 5 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.53E-18 | 5 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-14 | 6 | 96 | No hit | No description |
SMART | SM01019 | 8.4E-20 | 8 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-11 | 16 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MRMPNKRFFK PLVPGFHSHL TIPVAFFLKY IEGRNEHKNT ARLRSDASKI TWEVKIEDGQ 60 KLTDGWKEFA IAHDLHIGDI LIFRQEKDMA FHVTLLGPSG CEFQYESCSE EENNLGENIP 120 KKKNLEREAE FSSLDPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00013604001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140575.1 | 2e-91 | PREDICTED: B3 domain-containing protein REM14-like isoform X1 | ||||
Swissprot | Q8GYM4 | 4e-61 | REM14_ARATH; B3 domain-containing protein REM14 | ||||
TrEMBL | A0A078IST5 | 4e-98 | A0A078IST5_BRANA; BnaA04g28140D protein (Fragment) | ||||
TrEMBL | A0A3P6CYM0 | 1e-89 | A0A3P6CYM0_BRACM; Uncharacterized protein | ||||
STRING | Bra032075.1-P | 3e-86 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 2e-63 | B3 family protein |
Publications ? help Back to Top | |||
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