PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013389001
Common NameGSBRNA2T00013389001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 568aa    MW: 64607.7 Da    PI: 7.1898
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013389001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.3e-22110206198
                          EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                          f kvl+ sd++k+g +vl k++a e+    +    s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD +vF   + 
  GSBRNA2T00013389001 110 FTKVLSASDTNKKGSFVLNKRHAIEClplLLT--PSQEVIAKDIHGHEWSFKHTLRGTPQRHLFTSGWNEFAKGKNLVVGDCFVFL--RG 195
                          89*************************86444..3559************************************************..34 PP

                          SEE..EEEEE- CS
                   B3  88 sefelvvkvfr 98 
                          +++e +v++++
  GSBRNA2T00013389001 196 ENGESRVGIRK 206
                          78888999987 PP
2Auxin_resp85.51.1e-28233312183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a++ k++F v+Y+Pr+  s+F v+++k+ + +++k+svG+Rf m+fe+ d+se+r++Gt+vgv+d+++ +W++S+WrsL+
  GSBRNA2T00013389001 233 ALNAIERKCMFVVFYKPRS--SQFLVNFDKFIDGVNRKFSVGSRFLMKFEGRDFSEIRYYGTIVGVKDFST-HWKDSEWRSLE 312
                          6789**************6..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-32101212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-25107207IPR015300DNA-binding pseudobarrel domain
CDDcd100176.48E-22109206No hitNo description
PfamPF023627.6E-19110206IPR003340B3 DNA binding domain
SMARTSM010198.1E-18110208IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872110208IPR003340B3 DNA binding domain
PfamPF065072.3E-25233311IPR010525Auxin response factor
PROSITE profilePS5174512.022460538IPR000270PB1 domain
SuperFamilySSF542772.06E-5473530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MASGQIMHMQ PGFLATDGTN NYLYNQLWKL CAGPLFHLPK LVTSMNDELC QLKPIFDIPS  60
KICCNVFSIK LKVETTTDEI YAEISLLPDT SEVEIPTPRH ENNIQNINYF TKVLSASDTN  120
KKGSFVLNKR HAIECLPLLL TPSQEVIAKD IHGHEWSFKH TLRGTPQRHL FTSGWNEFAK  180
GKNLVVGDCF VFLRGENGES RVGIRKSAHH QQHNIPSPVI SKQSMHHGVV ATALNAIERK  240
CMFVVFYKPR SSQFLVNFDK FIDGVNRKFS VGSRFLMKFE GRDFSEIRYY GTIVGVKDFS  300
THWKDSEWRS LELQWNEAAT IPRPDKVSPW EIEPLTHSSN ILKSVFLKNK RQSEINDFGL  360
EIGQTSIQSS VSYSFPSISK PNYNEQMVQA MKETSTTTEA ASYRLFGVDL TVPAKTKDPV  420
QPTHSYKKSK ISKIFEEEKV DHIQTKTKVQ LKHGSSAFDM VIDQVCMEGA VERTMDLTVF  480
DGYNQLIDEL ERLFDIKDKL HMHNQWKIVF INADGDMMLL GDDPWPTAQK IFIYSENDAK  540
IVNADNKFAE GDPRLTTTIL PPDVNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-10113351355Auxin response factor 1
4ldw_A1e-10113351355Auxin response factor 1
4ldw_B1e-10113351355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013389001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635089.10.0PREDICTED: auxin response factor 20-like
SwissprotQ9C7I90.0ARFT_ARATH; Auxin response factor 20
TrEMBLA0A078IVU40.0A0A078IVU4_BRANA; Auxin response factor
STRINGBo7g067390.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35240.10.0auxin response factor 20
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]