PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00013352001
Common NameGSBRNA2T00013352001, LOC106363636
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 286aa    MW: 33085 Da    PI: 6.0519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00013352001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-172067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll +++ q   g+W+++a++ g++Rt+k+c++rw++yl
  GSBRNA2T00013352001 20 RGPWTLEEDTLLTNYIIQNSEGRWNLVAKCAGLKRTGKSCRLRWLNYL 67
                         89********************************************97 PP
2Myb_DNA-binding49.51e-1573116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ +++E++ ++d++ ++G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00013352001  73 RGKLSPQEQLMILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.0461567IPR017930Myb domain
SuperFamilySSF466896.6E-2917114IPR009057Homeodomain-like
SMARTSM007171.2E-131969IPR001005SANT/Myb domain
PfamPF002491.8E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-212174IPR009057Homeodomain-like
CDDcd001678.37E-102267No hitNo description
PROSITE profilePS5129424.23368122IPR017930Myb domain
SMARTSM007171.1E-1372120IPR001005SANT/Myb domain
PfamPF002491.3E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2275121IPR009057Homeodomain-like
CDDcd001671.74E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENSMKKKTF TESEEVELRR GPWTLEEDTL LTNYIIQNSE GRWNLVAKCA GLKRTGKSCR  60
LRWLNYLKPD IRRGKLSPQE QLMILDLHSK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIESN SDKFFDAVRS FWVPRLIEKM EQNPSNTYCC PQNNNNNNNS LLPPSQSYDS  180
MSKQTYTDIS GKNLGISNTD GSASSTTSMP DLMTVPHFMD HNTIIDSSMC YHEGNGQELG  240
GYIPGMEEYY MRNSDISTDC HVAEAYEDVT QDPMWNVDDI WQFRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22171224108B-MYB
1gv2_A2e-22171221105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-221712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00013352001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756551e-180KM975655.1 Brassica napus MYB transcription factor 62.1 (MYB62.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013658803.10.0transcription factor MYB62
SwissprotQ9C9G71e-154MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A078IXM20.0A0A078IXM2_BRANA; BnaC02g46060D protein
STRINGBo2g057760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-156myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]