PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012840001
Common NameGSBRNA2T00012840001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 966aa    MW: 105050 Da    PI: 7.8228
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012840001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.17.5e-08168186119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+++CH GpC+pC+
  GSBRNA2T00012840001 168 CGRHRCERTCHVGPCDPCQ 186
                          ******************6 PP
2zf-NF-X117.87.2e-06232249118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C++ CH+GpC+ C
  GSBRNA2T00012840001 232 CGNHFCSEVCHPGPCGDC 249
                          ****************99 PP
3zf-NF-X125.82.2e-08291308118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C++ CH G+CppC
  GSBRNA2T00012840001 291 CGLHTCNEVCHSGDCPPC 308
                          ****************** PP
4zf-NF-X116.61.8e-05389407119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++ CH G CppC 
  GSBRNA2T00012840001 389 CGQHSCESSCHSGHCPPCL 407
                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060083.19E-589151No hitNo description
SMARTSM004380.023113131IPR000967Zinc finger, NF-X1-type
PfamPF014227.1115130IPR000967Zinc finger, NF-X1-type
CDDcd060082.69E-12158206No hitNo description
SMARTSM004384.0E-5168187IPR000967Zinc finger, NF-X1-type
PfamPF014222.9E-6168185IPR000967Zinc finger, NF-X1-type
CDDcd060082.89E-8226267No hitNo description
SMARTSM004382.8E-5232251IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4232249IPR000967Zinc finger, NF-X1-type
CDDcd060083.76E-13281328No hitNo description
SMARTSM004382.9E-6291310IPR000967Zinc finger, NF-X1-type
PfamPF014224.4E-7291308IPR000967Zinc finger, NF-X1-type
SMARTSM0043891350381IPR000967Zinc finger, NF-X1-type
PfamPF0142216350361IPR000967Zinc finger, NF-X1-type
CDDcd060084.57E-9379431No hitNo description
SMARTSM004380.0011389408IPR000967Zinc finger, NF-X1-type
PfamPF014228.3E-4389406IPR000967Zinc finger, NF-X1-type
CDDcd060083.52E-6436483No hitNo description
SMARTSM004380.079446464IPR000967Zinc finger, NF-X1-type
PfamPF0142223446463IPR000967Zinc finger, NF-X1-type
SMARTSM004380.13499529IPR000967Zinc finger, NF-X1-type
PfamPF014220.024499514IPR000967Zinc finger, NF-X1-type
SMARTSM004380.14538559IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3303.2E-4790841IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MICYDMVGRS ANIWSCSSCY SIFHMHCIKK WARAPTSVDL LAEKNQGDNW RCPGCQSVQL  60
TSSREIFYRC FCGKRKDPPS DPYLTPHSCG EPCGKPLERE VSAIAEMDRD DLCPHVCVLQ  120
CHPGPCPPCK AFAPPRSCPC GKKMIHTRCS ERRSVLVCGQ RCEKLLDCGR HRCERTCHVG  180
PCDPCQVPVS ATCFCKKKAE TVICGEMNVK GELKADDGVY SCNFNCGKPL GCGNHFCSEV  240
CHPGPCGDCE LLPSRVKTCY CGKTRLEEQS RSSCLDPIPS CSNTCRKVLP CGLHTCNEVC  300
HSGDCPPCLV KVNQKCRCGS SFRTVECYFT TSSETEKFVC AKSCGRKKNC GRHRCSERCC  360
PLLNAKKNDL SGDWDPHACQ LPCGKNLRCG QHSCESSCHS GHCPPCLEMI FTDLTCACGR  420
TSIPPPLPCG TPVPSCQLPC SIPQPCGHSA THGCHFGDCP PCSAPVEKKC VGGHVVLRNI  480
PCGLKDIRCN KICGKTRRCG LHACARTCHP EPCDGYNESE AVSRVTCGQT CGAPRRDCRH  540
VCAALCHPSL PCPDSRCEFP VTITCSCGRL TATVPCDAGG ESAGNLRVGS VNETSVLNKL  600
PTPLQPVESS DNRIPLGQRK LSCDDECAKQ ERKRVLQDAF DITTPNLDSL HFSENSAMTE  660
IISDIYRRDP KWVLAVEERF KFLVLGKARG STSALKVHVF CPMQKDKLDT VRLLAERWKL  720
AVSNGGWEPK KFIVVHVTQK SKPPTRIIGA RGGAISVGGP HPPSFDPLVD MDPRLVVSLL  780
DLPREANVSA VVLRFGGECE LVWLNDKNAL AVFHDPARAA TAMRRLDHGS VYNGAVVVQN  840
AAQSQSLGNN AWGKLPSSSS WDVQKANPWK KAVIQESDDS WGADDSPIGG SSTDTQAYAW  900
RSATSNAPIV TSANRWSVLE PEKPKTSALE PLVQSGESSS SEATGKKLVE GSGEEVVDDW  960
EKVCE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.150080.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012840001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706028.10.0NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A078G2A90.0A0A078G2A9_BRANA; BnaC08g14030D protein
STRINGBo8g059130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]