PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012788001
Common NameGSBRNA2T00012788001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 256aa    MW: 29414.7 Da    PI: 9.8404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012788001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1627119197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++   d +++++  +p +f+++  ++   s  +++++++g sWevk+  + +++  y+ ++GW++Fv++n L +++ v+F+++g ++
  GSBRNA2T00012788001  27 FFKIFQGDDLSSESMRAFPYDFIRNVPQND-YSSNMVIRTQWGISWEVKV--SMNPRFyYMEKRGWNQFVNDNALGDKELVTFTHTGLMC 113
                          8899988889999999*******8885444.45589**************..999999566669********************998899 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v+++
  GSBRNA2T00012788001 114 F--NVMIY 119
                          9..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1721122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-1723123IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-1526119No hitNo description
SMARTSM010193.5E-1827122IPR003340B3 DNA binding domain
PfamPF023628.5E-1527119IPR003340B3 DNA binding domain
PROSITE profilePS5086312.39327122IPR003340B3 DNA binding domain
SMARTSM010190.046134249IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-9200246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-8201247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.007212249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMFPKEREIG SSSGLGQGEV DVKNLSFFKI FQGDDLSSES MRAFPYDFIR NVPQNDYSSN  60
MVIRTQWGIS WEVKVSMNPR FYYMEKRGWN QFVNDNALGD KELVTFTHTG LMCFNVMIYE  120
ENGKELVTPR RPRTMASLKS SNKDVKKKAE ETGGVRVKSK RFEEGETSKK KKKKMKSNND  180
EDSIQHHYKD IIPQVPANPN VVCLVRKARA TFSSGWARLV REYPLSVGDF CTFKFIKPTE  240
FHLAVSKKVE EIMSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012788001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022558658.11e-154B3 domain-containing protein At3g17010-like
RefseqXP_022563510.11e-154B3 domain-containing protein At3g17010-like
SwissprotQ9LSP64e-62Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A078G7N40.0A0A078G7N4_BRANA; BnaC08g14450D protein
STRINGBo8g059570.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.17e-62B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]