PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00012336001 | ||||||||
Common Name | GSBRNA2T00012336001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38377.8 Da PI: 5.4964 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.3 | 2.7e-48 | 18 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGf+F+Ptd el+++yLk+k++g + ++ e+i+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk++ GSBRNA2T00012336001 18 FPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPELDIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 106 59************************999.89***************778888899********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s ++e++g+k+tLvf+ grapkg +t+W+mhey + GSBRNA2T00012336001 107 NVKS-GSEVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 143 ****.9******************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-53 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.068 | 17 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-24 | 19 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MAEVSRDTSV SVAVSTAFPG FKFSPTDIEL ISYYLKRKMD GLERSVEIIP ELDIYNFEPW 60 DLPDKSIVKS DSEWFFFCAR GKKYPHGSQN RRATKMGYWK ATGKERNVKS GSEVIGTKRT 120 LVFHIGRAPK GGRTEWIMHE YCMIGVSLDG LVICRLRRNI EFQGATTQKP PPQPSLSLDK 180 KRNLQNETVS ESISGWENMV DYYLSGESGH ELLCEIAESS QSSHNPQVRS EEDFYADILL 240 DDIVKLDDPA DSGNTLIDVP RLQSESTTTR VLPLPSMVDK QMQSLLQKLP LQNDIGEENN 300 ISMSSCFIGI YSIKSINRAR WDVVAWVLVM IAVLVFYLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-42 | 19 | 159 | 22 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00012336001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974763 | 0.0 | KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639422.1 | 0.0 | PREDICTED: NAC domain-containing protein 60 isoform X1 | ||||
Swissprot | Q9LXL9 | 0.0 | NAC60_ARATH; NAC domain-containing protein 60 | ||||
TrEMBL | A0A078G4K1 | 0.0 | A0A078G4K1_BRANA; BnaC01g23890D protein | ||||
TrEMBL | A0A0D3A8I0 | 0.0 | A0A0D3A8I0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FDY0 | 0.0 | A0A3P6FDY0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g063720.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 0.0 | NAC domain containing protein 60 |
Publications ? help Back to Top | |||
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