PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012279001
Common NameGSBRNA2T00012279001, LOC106446655
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 510aa    MW: 58168.6 Da    PI: 9.9436
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012279001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-15693197
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                         ffk l     + s+ l++p  f+ ++  g k +e+ t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L+ gD+++Fk ++++ 
  GSBRNA2T00012279001  6 FFKPL--LPGFHSH-LTIPVAFFVKYieG-K-NEHHTTKLRSdASKITWEVKI--EDG-Q--KLTDGWKEFALAHDLRIGDILIFKQEKDMA 87
                         66666..5667777.***********844.4.455577777758889******..333.2..4***********************777677 PP

                         E..EEEEE CS
                   B3 90 felvvkvf 97
                         f  +v+++
  GSBRNA2T00012279001 88 F--HVTLL 93
                         7..77765 PP
2B365.67.2e-21141227896
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +++l+ + l lp++f++++g++++++++++l +e+g+sW++ l  +k sg +++++GW++F+ angLk+g + +Fkl++r ++ +v+++
  GSBRNA2T00012279001 141 PSSLRYDSLNLPRSFVRANGLETRCGREIVLINEKGKSWTLAL-KQKLSGPTYIRRGWRSFCIANGLKTGGVYTFKLIKRGRA-PVLRL 227
                          56778899***********************************.3555556**************************996444.66665 PP
3B370.32.4e-22262350797
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          +  +l+ + l lp kf +e+g++ +++ +++l++e+grsW+++l+ +++ g++++t+GW++F++angL++g + +Fkl++ ++++l +++
  GSBRNA2T00012279001 262 SRATLRYDTLGLPMKFSRENGLEARCG-EIVLMNEKGRSWKLNLKRKRSCGTMYITQGWRSFCSANGLRAGSSSTFKLIK-RGGTLALRL 349
                          556778899************998887.****************98999999**************************99.555566665 PP

                          E CS
                   B3  97 f 97 
                           
  GSBRNA2T00012279001 350 S 350
                          5 PP
4B348.41.7e-15410503599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + ++ +l++ +l lp +f++ hg+++e  ++++l d++g +W+  l+  + + +++ l +GW+eF kan +k g++++ kl+++ ++++ 
  GSBRNA2T00012279001 410 TFRPFNLEKYLLFLPLRFTRWHGINEE--TKMRLLDKNGVKWSTDLRSgKTNIDKIRLVGGWQEFFKANCVKPGESIIVKLIWDGDKSCI 497
                          55666788889***********99954..58***************7755555669****************************999999 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          +k+++k
  GSBRNA2T00012279001 498 LKFCSK 503
                          999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.266396IPR003340B3 DNA binding domain
CDDcd100171.38E-13493No hitNo description
SuperFamilySSF1019361.14E-184103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-226109IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.0E-21696IPR003340B3 DNA binding domain
PfamPF023621.1E-101489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.2E-20127228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-19129228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.48134230IPR003340B3 DNA binding domain
SMARTSM010192.3E-25135231IPR003340B3 DNA binding domain
PfamPF023621.6E-18141227IPR003340B3 DNA binding domain
CDDcd100173.72E-15144227No hitNo description
Gene3DG3DSA:2.40.330.109.4E-20249342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-17255349IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.059256353IPR003340B3 DNA binding domain
SMARTSM010191.2E-28257353IPR003340B3 DNA binding domain
PfamPF023621.1E-20262350IPR003340B3 DNA binding domain
CDDcd100175.05E-19265349No hitNo description
Gene3DG3DSA:2.40.330.103.4E-16398502IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-17401497IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-14406503IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464406504IPR003340B3 DNA binding domain
SMARTSM010193.3E-15406504IPR003340B3 DNA binding domain
CDDcd100171.79E-11421501No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVNKRFFKPL LPGFHSHLTI PVAFFVKYIE GKNEHHTTKL RSDASKITWE VKIEDGQKLT  60
DGWKEFALAH DLRIGDILIF KQEKDMAFHV TLLGPSGCEI QYESCSEEEN NFGNIPKKKN  120
SKREAESSSL DPSCFLANIW PSSLRYDSLN LPRSFVRANG LETRCGREIV LINEKGKSWT  180
LALKQKLSGP TYIRRGWRSF CIANGLKTGG VYTFKLIKRG RAPVLRLSST ESELEERNIE  240
KIQRNKAESS SLNPSCFVAN ISRATLRYDT LGLPMKFSRE NGLEARCGEI VLMNEKGRSW  300
KLNLKRKRSC GTMYITQGWR SFCSANGLRA GSSSTFKLIK RGGTLALRLS SKETEEEEED  360
CSLKANEVES LSTEPESDEE GSQDEKQIKK HRSTWKASSS QSQNRFVTLT FRPFNLEKYL  420
LFLPLRFTRW HGINEETKMR LLDKNGVKWS TDLRSGKTNI DKIRLVGGWQ EFFKANCVKP  480
GESIIVKLIW DGDKSCILKF CSKVKHETE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.65860.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012279001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743891.10.0B3 domain-containing protein REM14
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLA0A078G4M00.0A0A078G4M0_BRANA; BnaC04g36220D protein
STRINGBo4g154840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]