PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012277001
Common NameGSBRNA2T00012277001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 380aa    MW: 43301.7 Da    PI: 9.7682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012277001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-16695198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                         ffk l     + s+ l +p  f+++h +g +e + t +l++ +s  +W+vk+      ++  lt+GWkeF+ a++L++gD+vvF+ ++++ f
  GSBRNA2T00012277001  6 FFKPL--LPGFHSH-LKIPVAFFSKHiEGRNEHKNTAKLRSdTSEITWKVKI-----EDGLRLTEGWKEFALAHDLRVGDIVVFRQENDMAF 89
                         66666..5667777.9***********556667779999997888*******.....55678***********************6666777 PP

                         ..EEEEE- CS
                   B3 91 elvvkvfr 98
                           +v++f 
  GSBRNA2T00012277001 90 --HVTLFG 95
                         ..998875 PP
2B376.13.8e-24144229692
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          +++++l+ ++l +pk+fa+++g++++++  ++l++e+g sW++ l+ +++ g++++t+GW++F++angLk+g f++Fkl++r  ++l
  GSBRNA2T00012277001 144 VTPSSLRYDMLNIPKSFARANGIESRSGEIIVLMNEKGTSWTLILKRKNSCGTMYITRGWRRFCRANGLKAGCFFTFKLIQRG-GTL 229
                          7899999**************************************98888888***************************964.434 PP
3B363.34e-20277373199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ +++++  +++ l+lp +f+++h++++e  +++tl d+ g +W+  l+ +k+s+++ l +GWkeF kan ++ g++++ kl+++ ++
  GSBRNA2T00012277001 277 FVTLTLKPYEVEKSTLYLPVQFTRRHSINEE--TKMTLLDKYGVKWSTDLRSEKRSDKIRLVGGWKEFFKANCVEMGESIIVKLIWDGDT 364
                          667778899999999***********99954..58******************************************************* PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+k+++k
  GSBRNA2T00012277001 365 SCVLKFCSK 373
                          9*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-233109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.619397IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-203104IPR015300DNA-binding pseudobarrel domain
CDDcd100179.69E-17594No hitNo description
SMARTSM010196.4E-22697IPR003340B3 DNA binding domain
PfamPF023622.5E-111494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-23132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-21138232IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-22139232No hitNo description
PROSITE profilePS5086315.707139237IPR003340B3 DNA binding domain
SMARTSM010197.4E-31140236IPR003340B3 DNA binding domain
PfamPF023621.2E-22143231IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-19269373IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-19274366IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-15276371No hitNo description
PfamPF023626.7E-19277373IPR003340B3 DNA binding domain
SMARTSM010197.4E-25277374IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634277374IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLKI PVAFFSKHIE GRNEHKNTAK LRSDTSEITW KVKIEDGLRL  60
TEGWKEFALA HDLRVGDIVV FRQENDMAFH VTLFGPSCCE IQYGSCLDDK NKLVTIQSSK  120
KKMKNTKREA ESSTLEPSCY VANVTPSSLR YDMLNIPKSF ARANGIESRS GEIIVLMNEK  180
GTSWTLILKR KNSCGTMYIT RGWRRFCRAN GLKAGCFFTF KLIQRGGTLF LHKSPSSTES  240
EDSSEGDEIE PLSTESKSFK KTSSIWKASS SSFQNLFVTL TLKPYEVEKS TLYLPVQFTR  300
RHSINEETKM TLLDKYGVKW STDLRSEKRS DKIRLVGGWK EFFKANCVEM GESIIVKLIW  360
DGDTSCVLKF CSKVKQETR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191400.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012277001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743892.10.0putative B3 domain-containing protein REM15
SwissprotO230761e-115REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A078G6R20.0A0A078G6R2_BRANA; BnaC04g36230D protein
STRINGBo4g154830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-112B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]