PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012276001
Common NameGSBRNA2T00012276001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 235aa    MW: 27196.1 Da    PI: 9.1881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012276001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.8e-138673398
                         -SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 33 sktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         + + +l++  s  +W+vk+  + ++ r  lt+GWkeF+ a++L++gD+vvF+ +++++f  +v++f 
  GSBRNA2T00012276001  8 KNMAKLRSeASEMTWKVKI--EDGR-R--LTEGWKEFALAHDLRVGDIVVFRQEKDMSF--HVTLFG 67
                         4577888845669******..4444.3..9**********************7777777..998886 PP
2B3505.4e-16144234698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++    k++rl+lp  f+++ g++   +++l l d++  +W   l+ + +++r  + +GWk+F kan Lk g+++ Fkl+++ ++++v+k
  GSBRNA2T00012276001 144 IRYWDVKNSRLYLPMAFTKDSGINV--KTKLALLDKNDVKWPTDLRSEYNGKRLRMIGGWKKFFKANFLKIGESIKFKLIWDGNTSCVLK 231
                          555667899*********9998774..459***************9999999999999************************99999999 PP

                          EE- CS
                   B3  96 vfr 98 
                          +++
  GSBRNA2T00012276001 232 LCS 234
                          985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.675169IPR003340B3 DNA binding domain
SMARTSM010192.0E-4169IPR003340B3 DNA binding domain
CDDcd100179.97E-11366No hitNo description
Gene3DG3DSA:2.40.330.102.0E-20880IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-91066IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-151976IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15135230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-18136228IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-15139234IPR003340B3 DNA binding domain
PROSITE profilePS5086313.549139234IPR003340B3 DNA binding domain
SMARTSM010193.3E-15139234IPR003340B3 DNA binding domain
CDDcd100172.53E-14152230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGRNEHKNM AKLRSEASEM TWKVKIEDGR RLTEGWKEFA LAHDLRVGDI VVFRQEKDMS  60
FHVTLFGPSC CEIQYGSGID QDNNLEKIQE KKNPKREEAE SSCFVANVRL ESDEESNHIS  120
SQERIDREDK KGLTSQSRFV TLTIRYWDVK NSRLYLPMAF TKDSGINVKT KLALLDKNDV  180
KWPTDLRSEY NGKRLRMIGG WKKFFKANFL KIGESIKFKL IWDGNTSCVL KLCS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.191409e-96seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012276001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743894.11e-173B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A078G5U81e-173A0A078G5U8_BRANA; BnaC04g36240D protein
STRINGBo4g154810.11e-166(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2146535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.15e-52B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]