PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00012263001 | ||||||||
Common Name | GSBRNA2T00012263001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 30687.8 Da PI: 10.4981 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.3 | 2.5e-31 | 208 | 267 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp+++++tYegeH+h+k GSBRNA2T00012263001 208 ADEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDPTMLIVTYEGEHRHQK 267 69************************8766****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.8E-16 | 163 | 205 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 195 | 267 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.274 | 202 | 268 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 205 | 267 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-37 | 207 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-27 | 209 | 266 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MTVDIMRFPK MEDQTAIQEA ASQGLKSMEH LISVLSKRPK DHNADCSEIT DFTVSKFKKV 60 ISLLNRTGHA RFRRGPVQSS PSSSSSSAAA PPLPPASHPT PPSQLSPPAP QSLTLDFTRP 120 TFAKESFSVS SNSSFMSSAI TGDGSVSKGS SIFLAPAPTA PHDHSQNFSG KISGSGSGKC 180 HCKKSRKNRM KRSVRVPAIS AKIADIPADE YSWRKYGQKP IKGSPHPRGY YKCSTFRGCP 240 ARKHVERALD DPTMLIVTYE GEHRHQKSAM NENISSSLVF GSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 195 | 265 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4920 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00012263001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912392 | 0.0 | EU912392.1 Brassica napus WRKY17-1 transcription factor (WRKY17-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013743888.1 | 1e-162 | probable WRKY transcription factor 17 isoform X1 | ||||
Swissprot | Q9SV15 | 1e-147 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A078G193 | 0.0 | A0A078G193_BRANA; BnaC04g36310D protein | ||||
STRING | Bra032084.1-P | 1e-156 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-119 | WRKY DNA-binding protein 17 |