PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00012052001
Common NameGSBRNA2T00012052001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 644aa    MW: 74790.2 Da    PI: 9.5575
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00012052001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-15307358148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                          +g WT+e d+ll ++v ++ g++Wk+Ia++++    k++t+ qc++rw+k+l
  GSBRNA2T00012052001 307 KGGWTPEQDKLLMNGVWRYKGKNWKKIAECVPgrkdKRKTDVQCQHRWLKVL 358
                          688**********************************************986 PP
2Myb_DNA-binding49.31.2e-15405447145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
  GSBRNA2T00012052001 405 KTPWTREEELILVQAQRDQGNK-WAEIAKLLP-GRTENNIKNHWN 447
                          579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5018113.472148IPR001810F-box domain
SuperFamilySSF813832.88E-21195IPR001810F-box domain
Gene3DG3DSA:1.20.1280.509.1E-9238No hitNo description
PfamPF006464.4E-10245IPR001810F-box domain
SMARTSM002562.3E-9444IPR001810F-box domain
TIGRFAMsTIGR016401.1E-2261177IPR017451F-box associated interaction domain
PfamPF077342.8E-15180276IPR006527F-box associated domain, type 1
PROSITE profilePS5129416.437302362IPR017930Myb domain
SuperFamilySSF466891.67E-14304372IPR009057Homeodomain-like
SMARTSM007171.3E-11306360IPR001005SANT/Myb domain
PfamPF002491.7E-12307358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-16309372IPR009057Homeodomain-like
CDDcd001675.01E-9310358No hitNo description
PROSITE profilePS500905.552359399IPR017877Myb-like domain
SMARTSM007178.8363401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-12374407IPR009057Homeodomain-like
SuperFamilySSF466899.64E-24379456IPR009057Homeodomain-like
PROSITE profilePS5129422.628400454IPR017930Myb domain
SMARTSM007177.9E-15404452IPR001005SANT/Myb domain
PfamPF002491.4E-13405447IPR001005SANT/Myb domain
CDDcd001671.57E-9407447No hitNo description
Gene3DG3DSA:1.10.10.602.1E-19408453IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MSDLPEDLIE EILSRVPAAS LKRFRTTCKR WNALLKDQGF TEKHFRKAPN QSQVLFGFLV  60
FHCDGLLLCT NQKKTGLVVC NPCTRQARWI KPGNRHKMSD TYTLGSYQDI KSNNISYKIL  120
RCDEYEDKSR FEIYEFGCNS WRILDVTNDY NLTRFSDAVS WRGKTYWVTW DKKRENHGVI  180
VGEEKLSVLL LPSDTLRREI WVTNKIDEWN KVFTMDKWKR DWLVNIVSFL FDDEKKVFLC  240
CESLYIPDLV YVVGEDKEVK QVNGEAIDVF YDYVPSLVQI LNAQVTPPTC AIDSQERISG  300
PTRSSNKGGW TPEQDKLLMN GVWRYKGKNW KKIAECVPGR KDKRKTDVQC QHRWLKVLNP  360
NLNKGPWRKE NEKPKWSKIS KQLPGRIGKK CRKSIYNHLN PTIEKTPWTR EEELILVQAQ  420
RDQGNKWAEI AKLLPGRTEN NIKNHWNCSL KRRSEHLVTS SPLSGYGPCG YESSFFNQSN  480
MMEIKKAAKS PQRDSLELTL EPMNWRNTKV EITITPSSDD HHHKNVWLTP QLTTPSCVKV  540
PLSPETPQSS SAGQEVREII GRWKMAASTF ENTPSIISRR RSPASRRKQE NDSPFDRCPR  600
TLLSSEEELS VSNSSSSSSF THDTQQQLFR FKTLERRLEF DFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-433104539158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-433104539158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00012052001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512217.10.0PREDICTED: LOW QUALITY PROTEIN: myb-related protein 315
SwissprotQ9SPN31e-110MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A078IVP70.0A0A078IVP7_BRANA; BnaA02g36420D protein
STRINGBra008522.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.22e-99myb domain protein 3r2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]