PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011973001
Common NameGSBRNA2T00011973001, LOC106372922
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 234aa    MW: 27449.3 Da    PI: 8.2879
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011973001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.82.9e-25121171252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl
  GSBRNA2T00011973001 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIFRWPHRKLKSL 171
                          6799*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.143106193IPR003035RWP-RK domain
PfamPF020423.1E-21124171IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDPKFLQPLD SMKIENQYET DSLFDMLEKL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF  60
FENIEVNNNT ISSDILMLTQ EPYFSSDSSS PLVVQNNHCP STNERREKKA SKKKNTRAKR  120
QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI FRWPHRKLKS LNSLISNLKC  180
VGMDQEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GYY*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011973001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013668636.11e-172protein RKD4
SwissprotQ9LVU81e-108RKD4_ARATH; Protein RKD4
TrEMBLA0A078JWS31e-171A0A078JWS3_BRANA; BnaC09g53630D protein
STRINGBo9g108730.11e-169(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125852230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.15e-99RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER
    Gene regulatory network models for floral organ determination.
    Methods Mol. Biol., 2014. 1110: p. 441-69
    [PMID:24395275]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]