PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011973001 | ||||||||
Common Name | GSBRNA2T00011973001, LOC106372922 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 234aa MW: 27449.3 Da PI: 8.2879 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.8 | 2.9e-25 | 121 | 171 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl GSBRNA2T00011973001 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIFRWPHRKLKSL 171 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.143 | 106 | 193 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-21 | 124 | 171 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDPKFLQPLD SMKIENQYET DSLFDMLEKL PPLESLLDTE YLRPDPGLHF EYQYNSFEDF 60 FENIEVNNNT ISSDILMLTQ EPYFSSDSSS PLVVQNNHCP STNERREKKA SKKKNTRAKR 120 QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI FRWPHRKLKS LNSLISNLKC 180 VGMDQEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GYY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011973001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013668636.1 | 1e-172 | protein RKD4 | ||||
Swissprot | Q9LVU8 | 1e-108 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A078JWS3 | 1e-171 | A0A078JWS3_BRANA; BnaC09g53630D protein | ||||
STRING | Bo9g108730.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 5e-99 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106372922 |
Publications ? help Back to Top | |||
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