PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011750001

Common Name

GSBRNA2T00011750001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 199aa MW: 22873.3 Da PI: 9.085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011750001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.5e-10	41	66	8	33
HCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLee 33 rr+++NReAAr+sR+RKka++++Le GSBRNA2T00011750001 41 RRLAQNREAARKSRLRKKAYVQQLES 66 9***********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-9	33	83	No hit	No description
SMART	SM00338	3.6E-6	34	108	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.4E-7	38	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.06E-7	40	81	No hit	No description
PROSITE pattern	PS00036	0	41	56	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-30	117	189	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
YESYMAENLA MRPPTSTLNI FPSKPMHIEP PPSSSTPNTL RRLAQNREAA RKSRLRKKAY 60 VQQLESCRIK LTQLEQEIQR ARSQQGGMPI GPGYTSSEAA VFDMEYTRWL EEQQRLLTEL 120 RVATQEHLAE NELRMFVDTC LAHYDHLINL KAMVAKTDVF HLISGAWKTP AERCFLWMGG 180 FRPSEIIKVH ILSYSYTI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in inflorescence apex and flowers. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA9, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011750001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189367	1e-119	AC189367.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046M04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_850784.1	1e-118	bZIP transcription factor family protein
Swissprot	E3VNM4	1e-102	TGA10_ARATH; Transcription factor TGA10
TrEMBL	A0A078JXI4	1e-147	A0A078JXI4_BRANA; BnaAnng36310D protein (Fragment)
STRING	XP_006290099.1	1e-115	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.1	1e-112	bZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]