PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011673001
Common NameGSBRNA2T00011673001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 285aa    MW: 31736.5 Da    PI: 5.6026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011673001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17102152256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrd       r+r++lg+f taeeAa a+++a+ +l+g+
  GSBRNA2T00011673001 102 KYRGVRQRR-WGSFAAEIRD----SaSRTRIWLGTFATAEEAAVAYDRAAIRLKGH 152
                          8*****998.**********....3235*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.798102159IPR001471AP2/ERF domain
PfamPF008471.8E-11102152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-28102158IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-19102159IPR016177DNA-binding domain
CDDcd000185.43E-28102158No hitNo description
SMARTSM003801.6E-33102165IPR001471AP2/ERF domain
PRINTSPR003671.2E-9103114IPR001471AP2/ERF domain
PRINTSPR003671.2E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEKRTRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSGEEEN DKASPTPRVK  60
RYVEEIRFGE TKPPRKARCK AEKKGGGGER KAKADVSANP IKYRGVRQRR WGSFAAEIRD  120
SASRTRIWLG TFATAEEAAV AYDRAAIRLK GHNALTNFLT PPPSPEETTP VIDLKTVSGC  180
DSGSQSLCSP TSVLRFNVKE ETAEVKPDVA GLFPDPYSLP EFSLAGECFW DSEFPPEPLF  240
VDEIGIRKPV SNRREDDEPE EFSFRLNGDF DATPWDVDNF FELD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18103158662ATERF1
3gcc_A1e-18103158662ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79500.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011673001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104332.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3742e-95CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A078IVC50.0A0A078IVC5_BRANA; BnaA07g38140D protein
STRINGBra003462.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.14e-79cytokinin response factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]