PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011648001

Common Name

GSBRNA2T00011648001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 312aa MW: 33302.1 Da PI: 10.2854

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011648001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.1	5.2e-37	62	158	3	100
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ +++ + + ++++a GSBRNA2T00011648001 62 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTT--TNADAD 149 6999***********************************************************9999855522222222222..222222 PP TCP 92 ksaakskks 100 ++++ kk+ GSBRNA2T00011648001 150 VAENPAKKR 158 222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	66	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.327	67	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MATIKKHEAE RLRAVDLNII ETSKPFEVAN TVSLEAKAEP LLEVPSISMS LAPPSSSIGP 60 QLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LENAEPAIIA 120 ATGTGTVPAI AMSVNGTLKI PTTTNADADV AENPAKKRRK RPSNSEYIDI NEPVSVSVSS 180 GLAPASTVAQ QTLPQGMIPM WAFPSNAVVP TVGAFFLVQN PSNQPQILAY PAAATALPAT 240 YVAAVQQASS MARPPPPPQV VPNFTGSVMA PSSSSSIATK NMLRDFSLES YNKKELHQFM 300 TTTTVPRSSN H*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28123	1e-136	microspore-derived embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011648001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189580	0.0	AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009133741.1	0.0	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	1e-137	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A078IY03	0.0	A0A078IY03_BRANA; BnaA03g56900D protein
STRING	Bra000395.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-124	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]