PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011585001
Common NameGSBRNA2T00011585001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 393aa    MW: 41128 Da    PI: 6.5124
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011585001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.83.2e-41502163135
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                          + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++   
  GSBRNA2T00011585001  50 VTKRSSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPpsk 139
                          6799****************************************************************9998888888888866666777 PP

                  TCP  89 ................................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                                          ++  +  +++++q++a++   ++ es +++r r+ ++++e+   k++
  GSBRNA2T00011585001 140 svplygalglthhqyeeqggafgahtppllgfHHHLQ--QQHHQQAPAETIPGPDGESFSRKRYRSVDSSKEDGEGKQN 216
                          7889999999988888899999988887654422222..3334444444445555566666666666666665555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-4154210IPR005333Transcription factor, TCP
PROSITE profilePS5136928.33355109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDLSDDGAAA RGGSRHLVDP SLSIVPRSTP QEDPTTSSTA AAAATTSGVV TKRSSKDRHT  60
KVDGRGRRIR MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS  120
SLSVSLRSSG STLSAPPSKS VPLYGALGLT HHQYEEQGGA FGAHTPPLLG FHHHLQQQHH  180
QQAPAETIPG PDGESFSRKR YRSVDSSKED GEGKQNENKS LKESEPPAAA TGAPMWAVAP  240
TNRSAGGNTF WMLPVPTTTA GNQPAAMESS SNANRAHMWP FGGGGAGAGG GGATHFMAGT  300
GFSFPMDQYR GSPLQLGSFL AQPQQPNQNI GLSLPDSNLG VLAALNAAYP RGGNANAEQV  360
NNAVEHQEKQ QQQAQQSDQD DDSRDENSNS DG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.150911e-156seed
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011585001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605983.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5181e-176TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A078JXH10.0A0A078JXH1_BRANA; BnaCnng71510D protein
STRINGBo9g052090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-154TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]