PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011449001
Common NameGSBRNA2T00011449001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 197aa    MW: 22337.7 Da    PI: 10.3171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-2051100356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+++AeIrdp   + + +r++lg+f taeeAa a+++a+ +++g+
  GSBRNA2T00011449001  51 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 100
                          9*******.**********9...3.35*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.5E-3750113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3350108IPR001471AP2/ERF domain
CDDcd000189.37E-3450109No hitNo description
PROSITE profilePS5103223.72350107IPR001471AP2/ERF domain
PfamPF008474.6E-1450100IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2250108IPR016177DNA-binding domain
PRINTSPR003672.4E-115162IPR001471AP2/ERF domain
PRINTSPR003672.4E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTLIKWIIHI LNISLVFASF LFTVYILAHF IRTQCIFMNI PEQRKSRQRN YRGVRQRPWG  60
KYAAEIRDPN KAARVWLGTF NTAEEAALAY DKAAFEFRGH KAKLNFPEHI LINSTHRYPS  120
TATSHDPIIV TPVPPVAPDI LLDQYGKYLS ENSYSSAANL SMTISASSSS LSQQGNIPKL  180
EDSESVKNMS IHKRRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2749107160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013719340.11e-112ethylene-responsive transcription factor ERF112-like
SwissprotP930073e-64EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A078IXN61e-144A0A078IXN6_BRANA; BnaC04g44080D protein
STRINGBo4g182140.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-53ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]