PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011228001
Common NameGSBRNA2T00011228001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 275aa    MW: 30782.8 Da    PI: 9.3665
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011228001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.86.4e-15203252554
                          CHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkkeleelkk 54 
                          +r++r++kNRe+A rsR+RK++ ++ eLe kv +Le+eN++L+ +l+e +k
  GSBRNA2T00011228001 203 RRQKRMIKNRESAARSRARKQQaYTHELEIKVSSLEEENEKLR-RLKEVEK 252
                          79******************75499*****************9.8887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-13196246No hitNo description
SMARTSM003386.7E-6198256IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.623201246IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.13E-8203246No hitNo description
PfamPF001701.2E-11203246IPR004827Basic-leucine zipper domain
CDDcd147073.86E-20203249No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGSLRGNVEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNLDELL KSPREATEAG  60
LSRQGSLALP RGLSKKTVEE VWREIQHDKN GSSGNPHGER IDNNNNNKQP TLGEITLEDL  120
LLKAGVVTET VLPQTVVNVA SNEPWVQYHH PQHQQQGFMP YPVCEMQEMV SPMNMMMGDA  180
PQAHGRKGAA PSGGDIVERV VERRQKRMIK NRESAARSRA RKQQAYTHEL EIKVSSLEEE  240
NEKLRRLKEV EKILPSEPPP DPKWKLRRTS SASF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215223ARSRARKQQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.118490.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011228001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688656.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X1
SwissprotQ9C5Q21e-136AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A078IWB20.0A0A078IWB2_BRANA; BnaC04g52290D protein
STRINGBo4g012940.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-118bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  4. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]