PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00011138001

Common Name

GSBRNA2T00011138001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 280aa MW: 32247.2 Da PI: 7.9478

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00011138001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	17	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPtdeel+ +yL++kve+k+++l e ik+vdiyk++PwdLp+ + +ekewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk+ GSBRNA2T00011138001 17 LPGFRFHPTDEELLEYYLRRKVENKPIKL-ELIKQVDIYKYDPWDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTSSGFWKATGIDKP 105 69*************************.99***********7777799******************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s + vglkk+Lv+y g+a kg+ktdW+mhe+rl GSBRNA2T00011138001 106 VYS-NLDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 141 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-56	16	164	IPR003441	NAC domain
PROSITE profile	PS51005	53.859	16	165	IPR003441	NAC domain
Pfam	PF02365	1.1E-25	18	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSGEVSKDHQ EEDETTLPGF RFHPTDEELL EYYLRRKVEN KPIKLELIKQ VDIYKYDPWD 60 LPRVSSVGEK EWYFFCMRGR KYRNSVRPNR VTSSGFWKAT GIDKPVYSNL DCVGLKKSLV 120 YYLGSAGKGT KTDWMMHEFR LPSTTKTDSP VQQAEVWTLC RIFKRVTHQR NPTIVQSNRK 180 PVITLADSCS KTSSLDSDHT SHRVVDSLSH KLHEPHLQLQ SPTQNPYWNQ LTSFGFSQPT 240 YTCHDNSFLS FENINGGDFI GDSASWDELR SVIDGNTKH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	10	165	7	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	10	165	7	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	10	165	7	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	10	165	7	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-52	10	165	7	165	NAC domain-containing protein 19
4dul_B	3e-52	10	165	7	165	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00011138001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM975669	0.0	KM975669.1 Brassica napus NAC transcription factor 42.1 (NAC42.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001303030.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-170	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A078IW82	0.0	A0A078IW82_BRANA; BnaC04g52880D protein
TrEMBL	A0A3P6C4N4	0.0	A0A3P6C4N4_BRAOL; Uncharacterized protein
STRING	Bo4g018490.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	1e-172	NAC domain containing protein 42

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]