PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00011003001 | ||||||||
Common Name | GSBRNA2T00011003001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 502aa MW: 57249.5 Da PI: 6.8285 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.1 | 1.2e-21 | 66 | 166 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f kvl+ sd++++g +vl k++a e+ ++ + s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD++vF GSBRNA2T00011003001 66 FTKVLSASDTSTNGGFVLYKRHAIEClplldvsQLTP--SQEIIAKDIHGHEWSFKHTLRGTPKRHLFTSGWNEFAKGKKLVAGDSFVFL 153 89****************************9866554..559************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + +++e +v++ + GSBRNA2T00011003001 154 R--GENGESRVGISK 166 3..377777898865 PP | |||||||
2 | Auxin_resp | 86.5 | 5.4e-29 | 192 | 271 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a +a+++k++F v+Y+Pr+ s+F+v+++k+++ +++k+ +G++f m+fe++d +e+r+ Gt+vgv+d++ +W++S+WrsL+ GSBRNA2T00011003001 192 ALNAIENKCMFVVFYKPRS--SQFIVNFDKFVDRVNNKFNIGSKFSMKFEGKDLNEIRYNGTIVGVRDFSA-HWKDSEWRSLE 271 6799**************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-35 | 57 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-28 | 63 | 173 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.92E-19 | 65 | 166 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 66 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-19 | 66 | 165 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-19 | 66 | 168 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-26 | 192 | 270 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.261 | 390 | 470 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.88E-7 | 391 | 465 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MDDELCQLKP IFDIPSKICC NVFSIKLKVE TNTNEIYAEV SLLPDTSDVE IPIPKTENNI 60 QNINYFTKVL SASDTSTNGG FVLYKRHAIE CLPLLDVSQL TPSQEIIAKD IHGHEWSFKH 120 TLRGTPKRHL FTSGWNEFAK GKKLVAGDSF VFLRGENGES RVGISKAAHQ QRNIPTSLIS 180 KQSMHHSVVA TALNAIENKC MFVVFYKPRS SQFIVNFDKF VDRVNNKFNI GSKFSMKFEG 240 KDLNEIRYNG TIVGVRDFSA HWKDSEWRSL EVQWDEAATI PRPDKVSPWE IELLTHSSNI 300 FKSDTLKHKR QLEVHEFGSK MWVPTIYNER MVQAMKEPST TTATTSCRLF GVDLMVPAIT 360 KDPVEPIVSN KKCKISKIFE DEKVDHVQAK SRTKVHMEGV IERTVDLTIF DGYNQLIDEL 420 ERLFDIKGEL HMHNQWKMFF IYNDGDMMIL GDDPWPKFCN MAKEIFICSK EDVKIGIANN 480 RFSEGDPALT TTILPPDVNN T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-102 | 1 | 294 | 56 | 355 | Auxin response factor 1 |
4ldy_B | 1e-102 | 1 | 294 | 56 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00011003001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979486 | 0.0 | JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610570.1 | 0.0 | PREDICTED: putative auxin response factor 14 | ||||
Swissprot | Q9C8N9 | 1e-180 | ARFU_ARATH; Putative auxin response factor 21 | ||||
TrEMBL | A0A078IRA2 | 0.0 | A0A078IRA2_BRANA; Auxin response factor | ||||
TrEMBL | A0A3P6DR24 | 0.0 | A0A3P6DR24_BRAOL; Auxin response factor | ||||
STRING | Bra027944.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7653 | 6 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34410.1 | 0.0 | auxin response factor 21 |
Publications ? help Back to Top | |||
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