PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00011003001
Common NameGSBRNA2T00011003001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 502aa    MW: 57249.5 Da    PI: 6.8285
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00011003001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-2166166198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvl+ sd++++g +vl k++a e+       ++ +  s++++ +d +g +W++k++ r++++r+++t+GW+eF+k ++L +gD++vF 
  GSBRNA2T00011003001  66 FTKVLSASDTSTNGGFVLYKRHAIEClplldvsQLTP--SQEIIAKDIHGHEWSFKHTLRGTPKRHLFTSGWNEFAKGKKLVAGDSFVFL 153
                          89****************************9866554..559************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                          +   +++e +v++ +
  GSBRNA2T00011003001 154 R--GENGESRVGISK 166
                          3..377777898865 PP

2Auxin_resp86.55.4e-29192271183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a +a+++k++F v+Y+Pr+  s+F+v+++k+++ +++k+ +G++f m+fe++d +e+r+ Gt+vgv+d++  +W++S+WrsL+
  GSBRNA2T00011003001 192 ALNAIENKCMFVVFYKPRS--SQFIVNFDKFVDRVNNKFNIGSKFSMKFEGKDLNEIRYNGTIVGVRDFSA-HWKDSEWRSLE 271
                          6799**************6..9**********************************************777.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-3557180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-2863173IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-1965166No hitNo description
PROSITE profilePS5086312.37966168IPR003340B3 DNA binding domain
PfamPF023626.2E-1966165IPR003340B3 DNA binding domain
SMARTSM010191.4E-1966168IPR003340B3 DNA binding domain
PfamPF065071.4E-26192270IPR010525Auxin response factor
PROSITE profilePS5174517.261390470IPR000270PB1 domain
SuperFamilySSF542772.88E-7391465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDDELCQLKP IFDIPSKICC NVFSIKLKVE TNTNEIYAEV SLLPDTSDVE IPIPKTENNI  60
QNINYFTKVL SASDTSTNGG FVLYKRHAIE CLPLLDVSQL TPSQEIIAKD IHGHEWSFKH  120
TLRGTPKRHL FTSGWNEFAK GKKLVAGDSF VFLRGENGES RVGISKAAHQ QRNIPTSLIS  180
KQSMHHSVVA TALNAIENKC MFVVFYKPRS SQFIVNFDKF VDRVNNKFNI GSKFSMKFEG  240
KDLNEIRYNG TIVGVRDFSA HWKDSEWRSL EVQWDEAATI PRPDKVSPWE IELLTHSSNI  300
FKSDTLKHKR QLEVHEFGSK MWVPTIYNER MVQAMKEPST TTATTSCRLF GVDLMVPAIT  360
KDPVEPIVSN KKCKISKIFE DEKVDHVQAK SRTKVHMEGV IERTVDLTIF DGYNQLIDEL  420
ERLFDIKGEL HMHNQWKMFF IYNDGDMMIL GDDPWPKFCN MAKEIFICSK EDVKIGIANN  480
RFSEGDPALT TTILPPDVNN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-102129456355Auxin response factor 1
4ldy_B1e-102129456355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00011003001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794860.0JN979486.1 Brassica rapa subsp. pekinensis auxin response factor 25 (ARF25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610570.10.0PREDICTED: putative auxin response factor 14
SwissprotQ9C8N91e-180ARFU_ARATH; Putative auxin response factor 21
TrEMBLA0A078IRA20.0A0A078IRA2_BRANA; Auxin response factor
TrEMBLA0A3P6DR240.0A0A3P6DR24_BRAOL; Auxin response factor
STRINGBra027944.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34410.10.0auxin response factor 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]