PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00010891001 | ||||||||
Common Name | GSBRNA2T00010891001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 815aa MW: 89645.8 Da PI: 6.2947 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.4e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++ + +l +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F GSBRNA2T00010891001 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI- 213 99***********************9*****97777664.9************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ GSBRNA2T00010891001 214 -RNEKNQLFLGIRRA 227 .56888899999986 PP | |||||||
2 | Auxin_resp | 109.1 | 4.6e-36 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +t+s F+v+++Pras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k GSBRNA2T00010891001 252 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWSNSHWRSVK 335 799******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.66E-47 | 112 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-39 | 120 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-20 | 125 | 221 | No hit | No description |
Pfam | PF02362 | 6.6E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-31 | 252 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.4E-7 | 704 | 782 | No hit | No description |
Pfam | PF02309 | 8.6E-8 | 705 | 793 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.082 | 708 | 792 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV 60 DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP LTPEEQKETF VPIELGIPSK 120 QPGNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH 180 IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV IFIRNEKNQL FLGIRRAIRP QTIVPSSVLS 240 SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML 300 FETEESSVRR YMGTITGISD LDSVRWSNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSLFPL RLKRPWHAGT SSLHDGRGEL GNGLPWLRGG GGGEQQGLLP LNYPSVGLFP 420 WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPPPLT TTSHNSDLML 480 QQQQQHHLMH AQTQIMCENL PQRQEVSKQQ PAGGGGQQSV DQNAYLNALK IQNGQLQQWQ 540 QHSDMPSPSS FMKADFTDKF ATTASPIQQN SASPGSGHGS NLLNFSITGQ SALPEQLIGE 600 GWSPKASNTF SEPLSLPPQA YAGKSLALEP ASANVNPSVF GVDPGSGLFL PSTVPRFASS 660 SSGGDVEAYP VSLADSGFEN SLYNSCMQDT TPELLHGVGQ INPSNQTKNF VKVYKSGSVG 720 RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL GDDPWESFVS 780 NVWYIKILSP EDVQEMGDHG EGSGGSLPQN PTHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-152 | 8 | 356 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00010891001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979472 | 0.0 | JN979472.1 Brassica rapa subsp. pekinensis auxin response factor 8-2 (ARF8-2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013636814.1 | 0.0 | PREDICTED: auxin response factor 8 isoform X2 | ||||
Refseq | XP_013731922.1 | 0.0 | auxin response factor 8-like isoform X2 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A078IU86 | 0.0 | A0A078IU86_BRANA; Auxin response factor | ||||
STRING | Bo4g136370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |