PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00010843001 | ||||||||
Common Name | GSBRNA2T00010843001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 141aa MW: 15542.5 Da PI: 4.8578 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 24.8 | 6.1e-08 | 85 | 139 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk.....leleevikevd....iykvePwdLp 48 lp+G++F+P+d e++++ L+k+ + g + + e i++v+ i++++P++Lp GSBRNA2T00010843001 85 LPQGVKFDPSDPEIICHLLAKSgLLGLSshpfiN---ELITTVNqddgICYAHPKNLP 139 799************9999987544444544532...22333322234*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-9 | 70 | 139 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 11.332 | 85 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MVPDKLAELW VVDPERSKSC DYELLSFSCK RSWLVDSNGT ATKITSASSQ NDPHQVVWNS 60 NPTKLCPNCH HVIDNSYEVD DWPGLPQGVK FDPSDPEIIC HLLAKSGLLG LSSHPFINEL 120 ITTVNQDDGI CYAHPKNLPV * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00010843001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433044.1 | 1e-61 | PREDICTED: NAC domain-containing protein 8-like | ||||
Refseq | XP_018486643.1 | 1e-61 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 6e-56 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A078IU33 | 1e-98 | A0A078IU33_BRANA; BnaCnng25190D protein | ||||
TrEMBL | A0A3P6DII1 | 1e-98 | A0A3P6DII1_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g062590.1 | 2e-98 | (Brassica oleracea) | ||||
STRING | Bo5g073060.1 | 2e-98 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-52 | NAC family protein |